RNA–Protein interactions for RNA: ENST00000360718.5

SQSTM1-201, Transcript of sequestosome 1, humanhuman

TSL 1 (best) BASIC

Gene SQSTM1, Length 2,253 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-201ENST00000360718 NHSL2Q5HYW2 709 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 LCN8Q6JVE9 175 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 RETREG3Q86VR2 466 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 ERI1Q8IV48 349 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 PDPRQ8NCN5 879 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 B4GALNT2Q8NHY0 566 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 FAM81AQ8TBF8 368 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 TFAP2CQ92754 450 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 FAM210AQ96ND0 272 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 TBC1D17Q9HA65 648 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 PARVBQ9HBI1 364 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SDR39U1Q9NRG7 319 aaPredicted RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 AURKCQ9UQB9 309 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 PRKAB1Q9Y478 270 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 MYOCOSA0A1B0GUC4 107 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 NME4O00746 187 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 GIPC1O14908 333 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 BMP10O95393 424 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CHEK2O96017 543 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 GPIP06744 558 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 ANXA5P08758 320 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 MYCLP1P12525 358 aaPredicted RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 HGFP14210 728 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CKMT2P17540 419 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 MAP4P27816 1152 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CDK9P50750 372 aaKnown RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 NME5P56597 212 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CLCQ05315 142 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 LCP2Q13094 533 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 PHKG1Q16816 387 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CDKL4Q5MAI5 379 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SULT1C3Q6IMI6 304 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CRTC3Q6UUV7 619 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 LRRTM4Q86VH4 590 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 TRIM69Q86WT6 500 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SLC15A3Q8IY34 581 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CFAP206Q8IYR0 622 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SNX31Q8N9S9 440 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 TSTD1Q8NFU3 115 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 TNIP2Q8NFZ5 429 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 MCOLN3Q8TDD5 553 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 ASB11Q8WXH4 323 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 LRRC58Q96CX6 371 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 LINC00615Q96LM1 132 aaPredicted RBP12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SLC39A3Q9BRY0 314 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 C1QTNF3Q9BXJ4 246 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 SLC12A9Q9BXP2 914 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 IL1RL2Q9HB29 575 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 OLAHQ9NV23 265 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 ARL15Q9NXU5 204 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 CA5BQ9Y2D0 317 aa12.78□□□□□ -0.36
SQSTM1-201ENST00000360718 PCM1Q15154 2024 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 A0A087WXM4 84 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 SLC5A10A0PJK1 596 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 C10orf142B7Z368 130 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 H3BM21 787 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 CACNB4O00305 520 aaPredicted RBP12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 STK25O00506 426 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 POP7O75817 140 aaKnown RBP12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 MLYCDO95822 493 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 FUCA1P04066 466 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 RPS17P08708 135 aaKnown RBP12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 ATP6V1B2P21281 511 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 AGTR2P50052 363 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 KCTD21Q4G0X4 260 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 C11orf96Q7Z7L8 435 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 UBALD2Q8IYN6 164 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 DENND6BQ8NEG7 585 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 FOXJ1Q92949 421 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 NUSAP1Q9BXS6 441 aaKnown RBP12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 DDX18Q9NVP1 670 aaKnown RBP12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 WWOXQ9NZC7 414 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 ASB1Q9Y576 335 aa12.77□□□□□ -0.36
SQSTM1-201ENST00000360718 RNF103-CHMP3A0A140T963 221 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 KRT87PA6NCN2 255 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 MGAT4DA6NG13 374 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 SOCS2O14508 198 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 SEMA4FO95754 770 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 PREPP48147 710 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 PXNP49023 591 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 AP1S2P56377 157 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 KCNK10P57789 538 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 ABRQ12979 859 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 GRB7Q14451 532 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 PCBP2Q15366 365 aaKnown RBP eCLIP12.77□□□□□ -0.372e-6■□□□□ 10.9
SQSTM1-201ENST00000360718 C18orf21Q32NC0 220 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 AASDHQ4L235 1098 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 OGFOD2Q6N063 350 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 BLOC1S3Q6QNY0 202 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 AMZ2Q86W34 360 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 SPPL2CQ8IUH8 684 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 SLC22A15Q8IZD6 547 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 TCAIMQ8N3R3 496 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 FAM160A2Q8N612 972 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 OR2L2Q8NH16 312 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 RLN3Q8WXF3 142 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 ESAMQ96AP7 390 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 CENPNQ96H22 339 aaPredicted RBP12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 HGH1Q9BTY7 390 aa12.77□□□□□ -0.37
SQSTM1-201ENST00000360718 TPSD1Q9BZJ3 242 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms