RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC25A3Q00325 362 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MYBPC1Q00872 1141 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TWF1Q12792 350 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 EFEMP1Q12805 493 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FGL2Q14314 439 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SMAD1Q15797 465 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 CTXN3Q4LDR2 81 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SLC44A4Q53GD3 710 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HSP90B2PQ58FF3 399 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 NHSL2Q5HYW2 709 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PAGE3Q5JUK9 113 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TCHHL1Q5QJ38 904 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 METTL21CQ5VZV1 264 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ANKS6Q68DC2 871 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TXNDC8Q6A555 127 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCDC70Q6NSX1 233 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TBPL2Q6SJ96 375 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SUSD1Q6UWL2 747 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LEKR1Q6ZMV7 388 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MACC1Q6ZN28 852 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 BZW1Q7L1Q6 419 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 DNAJB7Q7Z6W7 309 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 LONP2Q86WA8 852 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CARM1Q86X55 608 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SPATA2LQ8IUW3 424 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 CHERPQ8IWX8 916 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 SIX6OS1Q8N1H7 587 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MIER2Q8N344 545 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SFRP1Q8N474 314 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 BMPERQ8N8U9 685 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TP53I13Q8NBR0 393 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR52E4Q8NGH9 312 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR1N1Q8NGS0 311 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 EEF1AKMT1Q8WVE0 214 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TANKQ92844 425 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HDAC10Q969S8 669 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TMEM125Q96AQ2 219 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PEX11GQ96HA9 241 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CABS1Q96KC9 395 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DEFB118Q96PH6 123 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MRPL57Q9BQC6 102 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 RTKNQ9BST9 563 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCDC28BQ9BUN5 200 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OSBPL6Q9BZF3 934 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MCOLN1Q9GZU1 580 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HIPK3Q9H422 1215 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ZNF552Q9H707 407 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 OLA1Q9NTK5 396 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 INTS10Q9NVR2 710 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 RBM22Q9NW64 420 aaKnown RBP eCLIP2.25□□□□□ -2.053e-6■■■■□ 22.6
VPS54-202ENST00000354504 GPRC5BQ9NZH0 403 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 POLG2Q9UHN1 485 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FBXO5Q9UKT4 447 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ARHGAP26Q9UNA1 814 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 AAR2Q9Y312 384 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 KNL1Q8NG31 2342 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 A0A087X1B8 175 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ABHD14A-ACY1A0A1B0GW23 586 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 WDR91A4D1P6 747 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 IQCF5A8MTL0 148 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PRRT4C9JH25 899 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 STX16O14662 325 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DENRO43583 198 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 ECI2O75521 394 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RNASEH2AO75792 299 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 BCAS2O75934 225 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 IPO13O94829 963 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 LUC7L3O95232 432 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 PIGNO95427 931 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ETHE1O95571 254 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 EPPINO95925 133 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CLTBP09497 229 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RALBP11234 206 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 COX4I1P13073 169 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CPA3P15088 417 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ACADSP16219 412 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ATP6V1B2P21281 511 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PIK3R1P27986 724 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ACADLP28330 430 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 EPHA3P29320 983 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ATP5DP30049 168 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCR7P32248 378 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SERPINB5P36952 375 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HADHAP40939 763 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FRKP42685 505 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 STK19P49842 368 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 HTR6P50406 440 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 COPAP53621 1224 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCL23P55773 120 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ECT2LQ008S8 904 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SLC12A1Q13621 1099 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 BLMHQ13867 455 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PHKG1Q16816 387 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TCEAL5Q5H9L2 206 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ADNP2Q6IQ32 1131 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TIGD7Q6NT04 549 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 NEK5Q6P3R8 708 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ESPNLQ6ZVH7 1005 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PID1Q7Z2X4 250 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 TBC1D1Q86TI0 1168 aaPredicted RBP2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms