RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 NLGN4XQ8N0W4 816 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 PSKH2Q96QS6 385 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 COPS4Q9BT78 406 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 CLDN24A6NM45 220 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 CBX4O00257 560 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 SLC28A1O00337 649 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 MANBAO00462 879 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ESR1P03372 595 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 EFNA1P20827 205 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 CYP4F2P78329 520 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ZNF181Q2M3W8 571 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 LINGO4Q6UY18 593 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 SLC24A5Q71RS6 500 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 PDLIM5Q96HC4 596 aaKnown RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 KCNC2Q96PR1 638 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 MMP27Q9H306 513 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 TM9SF3Q9HD45 589 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 IL1RAPQ9NPH3 570 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 PPT2Q9UMR5 302 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ISPDA4D126 451 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 NBNO60934 754 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 OAZ2O95190 189 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 GLUD1P00367 558 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 CTPS1P17812 591 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 PPP3CCP48454 512 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 RPS14P62263 151 aaKnown RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 FADDQ13158 208 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 MAD2L1Q13257 205 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 TRAF7Q6Q0C0 670 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 Q96MT0 163 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 FAM193BQ96PV7 902 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ACPTQ9BZG2 426 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 GABARAPL1Q9H0R8 117 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 OR51E2Q9H255 320 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 FBXO44Q9H4M3 255 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 WDR70Q9NW82 654 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 TMEM98Q9Y2Y6 226 aa21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ZFP37Q9Y6Q3 630 aaPredicted RBP21.76■■□□□ 1.07
TRIM28-202ENST00000341753 ANKRD66B4E2M5 251 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 NDUFB5O43674 189 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 DYRK3O43781 588 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 FABP3P05413 133 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 DNAJA1P31689 397 aaKnown RBP21.75■■□□□ 1.07
TRIM28-202ENST00000341753 PTGER3P43115 390 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 MAPKAPK2P49137 400 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 CRISP3P54108 245 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 TIGD6Q17RP2 521 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 FAM151BQ6UXP7 276 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 GDPD3Q7L5L3 318 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 TSPYL5Q86VY4 417 aaPredicted RBP21.75■■□□□ 1.07
TRIM28-202ENST00000341753 REXO4Q9GZR2 422 aaKnown RBP21.75■■□□□ 1.07
TRIM28-202ENST00000341753 P2RY12Q9H244 342 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 KCNH6Q9H252 994 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 CCNB1IP1Q9NPC3 277 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 AASDHPPTQ9NRN7 309 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 SAMD4AQ9UPU9 718 aaKnown RBP21.75■■□□□ 1.07
TRIM28-202ENST00000341753 F5H5T6 163 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 ERN1O75460 977 aaKnown RBP21.75■■□□□ 1.07
TRIM28-202ENST00000341753 PTPN6P29350 595 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 SLC19A1P41440 591 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 OR4F3Q6IEY1 312 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 KIAA1958Q8N8K9 716 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 TPD52L3Q96J77 140 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 CDADC1Q9BWV3 514 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 PCDHB5Q9Y5E4 795 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 PRSS21Q9Y6M0 314 aa21.75■■□□□ 1.07
TRIM28-202ENST00000341753 CCNKO75909 580 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 FPR1P21462 350 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 CTSKP43235 329 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 TWF1Q12792 350 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 FOXD4Q12950 439 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 NPRL3Q12980 569 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 ALG1LQ6GMV1 187 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 PDE12Q6L8Q7 609 aaKnown RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 VASH1Q7L8A9 365 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 P3H2Q8IVL5 708 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 HSH2DQ96JZ2 352 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 THUMPD1Q9NXG2 353 aaKnown RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 VWA8A3KMH1 1905 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 GOLGA8CPA6NN73 597 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 RFXANKO14593 260 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 CLCN4P51793 760 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 SREBF2Q12772 1141 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 UBE2UQ5VVX9 321 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 TMEM173Q86WV6 379 aaPredicted RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 MMAAQ8IVH4 418 aaKnown RBP21.74■■□□□ 1.07
TRIM28-202ENST00000341753 EID2BQ96D98 161 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 CD244Q9BZW8 370 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 NACA2Q9H009 215 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 C14orf119Q9NWQ9 140 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 HSPE1-MOB4S4R3N1 261 aa21.74■■□□□ 1.07
TRIM28-202ENST00000341753 ILVBLA1L0T0 632 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 CCNDBP1O95273 360 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 PDYNP01213 254 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 COL6A1P12109 1028 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 ABHD18Q0P651 414 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 TP53BP2Q13625 1128 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 PROX2Q3B8N5 592 aa21.73■■□□□ 1.07
TRIM28-202ENST00000341753 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP21.73■■□□□ 1.07
TRIM28-202ENST00000341753 NEK10Q6ZWH5 1172 aa21.73■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms