RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 A0A1W2PQ09 198 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 LRATO95237 230 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 FKBP9O95302 570 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 TSPAN12O95859 305 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 ITGB1P05556 798 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 UQCRC1P31930 480 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 CAMK2GQ13555 558 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 GRIK4Q16099 956 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 DUSP7Q16829 419 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 GPAT3Q53EU6 434 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 ALFQ53S48 1182 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 HORMAD1Q86X24 394 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 BRSK1Q8TDC3 778 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 CDKN2AIPNLQ96HQ2 116 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SENP8Q96LD8 212 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 VPS35Q96QK1 796 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SEMA3CQ99985 751 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 DPH2Q9BQC3 489 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 C2orf49Q9BVC5 232 aaPredicted RBP13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 RRAGCQ9HB90 399 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 SYTL2Q9HCH5 934 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 PSORS1C1Q9UIG5 152 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 HS3ST4Q9Y661 456 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 COMMD10Q9Y6G5 202 aa13.09□□□□□ -0.31
CCDC88C-201ENST00000331194 HMX3A6NHT5 357 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 H3BRB1 525 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 YES1P07947 543 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 GZMMP51124 257 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 MED22Q15528 200 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 TIGD7Q6NT04 549 aaPredicted RBP13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 NOTUMQ6P988 496 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 DOK6Q6PKX4 331 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 GOLGA7Q7Z5G4 137 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 GALNT7Q86SF2 657 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 LAX1Q8IWV1 398 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 PIANPQ8IYJ0 282 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 KBTBD8Q8NFY9 601 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 ARRDC2Q8TBH0 407 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 ZBTB18Q99592 522 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 CNPPD1Q9BV87 410 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 EXOSC4Q9NPD3 245 aaKnown RBP13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 RBPJLQ9UBG7 517 aa13.08□□□□□ -0.31
CCDC88C-201ENST00000331194 DOCK1Q14185 1865 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 A8MX80 341 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 TREHO43280 583 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 RPP40O75818 363 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 IL7P13232 177 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 TSTQ16762 297 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ABI3BPQ7Z7G0 1075 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 CCDC28AQ8IWP9 274 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 CACTIN-AS1Q8N1I8 211 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ZNF557Q8N988 423 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 OR4M1Q8NGD0 313 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 IPCEF1Q8WWN9 437 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 PMEPA1Q969W9 287 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 CCDC120Q96HB5 630 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 TPD52L3Q96J77 140 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ABCB8Q9NUT2 735 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 PCDHB5Q9Y5E4 795 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 SMIM30A4D0T7 59 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 COL6A1P12109 1028 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 SSTR4P31391 388 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 HSPA7P48741 367 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 RENBPP51606 427 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ELP6Q0PNE2 266 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ST3GAL4Q11206 333 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 EFR3AQ14156 821 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ZNF79Q15937 498 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 NFE2Q16621 373 aaPredicted RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 GNASQ5JWF2 1037 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 PDE12Q6L8Q7 609 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 RTL3Q8N8U3 475 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 OR4K2Q8NGD2 314 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 TRMT61AQ96FX7 289 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 ZNF382Q96SR6 550 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 PAAF1Q9BRP4 392 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 C16orf70Q9BSU1 422 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 BARHL1Q9BZE3 327 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 MAGIXQ9H6Y5 334 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 IPPKQ9H8X2 491 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 BPIFA1Q9NP55 256 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 IL1RAPQ9NPH3 570 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 THUMPD1Q9NXG2 353 aaKnown RBP13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 STMN3Q9NZ72 180 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 GPRC5BQ9NZH0 403 aa13.08□□□□□ -0.32
CCDC88C-201ENST00000331194 STX16O14662 325 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 IRAK2O43187 625 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 ZNF780AO75290 641 aaPredicted RBP13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 NDUFS3O75489 264 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 SLITRK5O94991 958 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 CDK1P06493 297 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 HOXD10P28358 340 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 DNAJA1P31689 397 aaKnown RBP13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 HNF4AP41235 474 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 TTLL4Q14679 1199 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 MANEALQ5VSG8 457 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 DNAJC22Q8N4W6 341 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 TOP6BLQ8N6T0 577 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 DHRS9Q9BPW9 319 aa13.07□□□□□ -0.32
CCDC88C-201ENST00000331194 CCDC59Q9P031 241 aaKnown RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms