RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ATP6AP2O75787 350 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 LUC7L3O95232 432 aaKnown RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 FAM157CP0CG43 387 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 GP1BBP13224 206 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 AZGP1P25311 298 aaKnown RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 CHRNB4P30926 498 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 CSTF2P33240 577 aaKnown RBP eCLIP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 WNT5AP41221 380 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 MAGEA11P43364 429 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 VAMP7P51809 220 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 BMXP51813 675 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 CAPZA1P52907 286 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 UBASH3AP57075 661 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 RBP5P82980 135 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 CDR2Q01850 454 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 KRT81Q14533 505 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 TEAD2Q15562 447 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 UGP2Q16851 508 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 TWISTNBQ3B726 338 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 KRTAP24-1Q3LI83 254 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF876PQ49A33 203 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 GTDC1Q4AE62 458 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 ARHGEF16Q5VV41 709 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 OR4A47Q6IF82 309 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 TRAT1Q6PIZ9 186 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 Q6ZTC4 211 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 DNAJB7Q7Z6W7 309 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 NKAIN3Q8N8D7 197 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 NOA1Q8NC60 698 aaKnown RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 OR13C3Q8NGS6 347 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 DEPDC1BQ8WUY9 529 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 HPSE2Q8WWQ2 592 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 TMEM190Q8WZ59 177 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 PIGBQ92521 554 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 DYRK2Q92630 601 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 LGALS12Q96DT0 336 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 ERO1AQ96HE7 468 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 KATNB1Q9BVA0 655 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 GTPBP2Q9BX10 602 aaKnown RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 OR2B2Q9GZK3 357 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 DNAJC4Q9NNZ3 241 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 MAN1B1Q9UKM7 699 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 DCAF1Q9Y4B6 1507 aa3.02□□□□□ -1.93
HMGB1-201ENST00000326004 MAGI1Q96QZ7 1491 aaPredicted RBP3.02□□□□□ -1.93
HMGB1-201ENST00000326004 CASTOR2A6NHX0 329 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF197O14709 1029 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 GLRA3O75311 464 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 AP2A2O94973 939 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 GSRP00390 522 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 NGFP01138 241 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 APOHP02749 345 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 AMBPP02760 352 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 HSP90AB1P08238 724 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 PATE4P0C8F1 98 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 PDGFRAP16234 1089 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ADRA2CP18825 462 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 GLIPR1P48060 266 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ILF2Q12905 390 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 BFSP1Q12934 665 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 HERC3Q15034 1050 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 RRS1Q15050 365 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 PTGISQ16647 500 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 XKR6Q5GH73 641 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SPOUT1Q5T280 376 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SHEQ5VZ18 495 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ARHGAP17Q68EM7 881 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 FAM53AQ6NSI3 398 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 DCLRE1AQ6PJP8 1040 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 G2E3Q7L622 706 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 GALNTL5Q7Z4T8 443 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ZNF329Q86UD4 541 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 KLHDC8BQ8IXV7 354 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 KIRREL3Q8IZU9 778 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 NIPA2Q8N8Q9 360 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 OR10Q1Q8NGQ4 319 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 KCNE4Q8WWG9 221 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SUSD6Q92537 303 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SPATA33Q96N06 139 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 CITED2Q99967 270 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ADPGKQ9BRR6 497 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 INPP5KQ9BT40 448 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SLC2A11Q9BYW1 496 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 FAM49AQ9H0Q0 323 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ALDH8A1Q9H2A2 487 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 TLE6Q9H808 572 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 ZWILCHQ9H900 591 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 SH3GLB2Q9NR46 395 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 TXLNGQ9NUQ3 528 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 INTS9Q9NV88 658 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 C19orf25Q9UFG5 118 aaPredicted RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 GAB2Q9UQC2 676 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 TOPBP1Q92547 1522 aa3.01□□□□□ -1.93
HMGB1-201ENST00000326004 PPRC1Q5VV67 1664 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 RIMS1Q86UR5 1692 aaKnown RBP3.01□□□□□ -1.93
HMGB1-201ENST00000326004 IGHV4-4A0A075B6R2 117 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 TRAV34A0A0B4J273 112 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 PSMD14O00487 310 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 EDIL3O43854 480 aa3□□□□□ -1.93
HMGB1-201ENST00000326004 TRMUO75648 421 aaKnown RBP3□□□□□ -1.93
HMGB1-201ENST00000326004 CDK2AP2O75956 126 aa3□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms