RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ARHGEF33A8MVX0 844 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 M0QZQ0 153 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 IGSF6O95976 241 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 MYL9P24844 172 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 SMIM11AP58511 58 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 RPS24P62847 133 aaKnown RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 GALNT2Q10471 571 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 IQCCQ4KMZ1 466 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 ANXA8L1Q5VT79 327 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 PLPP4Q5VZY2 271 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 STEAP4Q687X5 459 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TUBA3EQ6PEY2 450 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 ASB18Q6ZVZ8 466 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 KLHDC9Q8NEP7 349 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TMEM175Q9BSA9 504 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TVP23BQ9NYZ1 205 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 URB1O60287 2271 aaKnown RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 CLIC1O00299 241 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 SGTAO43765 313 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 DYRK3O43781 588 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 DFNA5O60443 496 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 KERAO60938 352 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 FYNP06241 537 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 GDF5P43026 501 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 DNAJB13P59910 316 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 CD47Q08722 323 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 GANABQ14697 944 aaKnown RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 PAQR9Q6ZVX9 377 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TRAPPC5Q8IUR0 188 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 CHERPQ8IWX8 916 aaKnown RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 ARL14EPQ8N8R7 260 aaPredicted RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 C7orf57Q8NEG2 295 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 ATL1Q8WXF7 558 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 ZNF717Q9BY31 904 aaPredicted RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 SPIN1Q9Y657 262 aaPredicted RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 GUCY1B2O75343 617 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 JUNP05412 331 aaKnown RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 ANXA4P09525 319 aaPredicted RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 IL4RP24394 825 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 IGFBP6P24592 240 aaPredicted RBP14.98□□□□□ -0.01
SHH-201ENST00000297261 AGTR2P50052 363 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 HKDC1Q2TB90 917 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TECRLQ5HYJ1 363 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 C6orf136Q5SQH8 315 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 KIAA0319Q5VV43 1072 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 C14orf80Q86SX3 495 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 DPF3Q92784 378 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 KAT2AQ92830 837 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 PYCR2Q96C36 320 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 CDKN2AIPNLQ96HQ2 116 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 MYRFLQ96LU7 910 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 YIPF2Q9BWQ6 316 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 FAM118AQ9NWS6 357 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 BAIAP2Q9UQB8 552 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 UBE2QL1A1L167 161 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TLL1O43897 1013 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 TPST2O60704 377 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 PRLP01236 227 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 PPP5CP53041 499 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 DCDC1P59894 354 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 USP45Q70EL2 814 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 PHC2Q8IXK0 858 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 XAGE5Q8WWM1 108 aa14.98□□□□□ -0.01
SHH-201ENST00000297261 SLC1A7O00341 560 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 OXTRP30559 389 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CHIT1Q13231 466 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 PTGR1Q14914 329 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 CCDC28AQ8IWP9 274 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 LGI4Q8N135 537 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 ZFP90Q8TF47 636 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 ZFP3Q96NJ6 502 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 MTERF1Q99551 399 aaKnown RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 CTPS2Q9NRF8 586 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CFAP97Q9P2B7 532 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 NFKBIL1Q9UBC1 381 aaPredicted RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 PLOD2O00469 737 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 DCLK1O15075 740 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 SLC28A2O43868 658 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 ERAL1O75616 437 aaKnown RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 GADD45GO95257 159 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 SLC2A2P11168 524 aaPredicted RBP14.97□□□□□ -0.01
SHH-201ENST00000297261 CAPN3P20807 821 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CREB5Q02930 508 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.97□□□□□ -0.01
SHH-201ENST00000297261 OR4F3Q6IEY1 312 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 CNKSR3Q6P9H4 555 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 MINDY1Q8N5J2 469 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 TTC9BQ8N6N2 239 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 TP53INP1Q96A56 240 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 COL26A1Q96A83 441 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 PYURFQ96I23 114 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 FRMD6Q96NE9 622 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 MFSD1Q9H3U5 465 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 ERVK13-1Q9NX77 482 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 SEC14L3Q9UDX4 400 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 YIPF1Q9Y548 306 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 DNAJC15Q9Y5T4 150 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 OR5F1O95221 314 aa14.97□□□□□ -0.01
SHH-201ENST00000297261 C7P10643 843 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms