RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 TMEM132CQ8N3T6 1108 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 C1orf52Q8N6N3 182 aaKnown RBP16.14■□□□□ 0.17
VPS54-201ENST00000272322 ATG16L2Q8NAA4 619 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 ZSWIM3Q96MP5 696 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 PLAGL1Q9UM63 463 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 SNX6Q9UNH7 406 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 COL4A4P53420 1690 aaPredicted RBP16.14■□□□□ 0.17
VPS54-201ENST00000272322 ARNTLO00327 626 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 STATHP02808 62 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 PABPC1P11940 636 aaKnown RBP16.14■□□□□ 0.17
VPS54-201ENST00000272322 POU2F1P14859 743 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 ACSM2AQ08AH3 577 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 ACSM2BQ68CK6 577 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 CRTC3Q6UUV7 619 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 TRMT2BQ96GJ1 504 aaKnown RBP16.14■□□□□ 0.17
VPS54-201ENST00000272322 TCF25Q9BQ70 676 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 ACSL6Q9UKU0 697 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 M0R129 80 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 TGFB1P01137 390 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 CCL5P13501 91 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 MC1RQ01726 317 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 GPR33Q49SQ1 333 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 SERHLQ9NQF3 203 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 DNAJC11Q9NVH1 559 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 DNAJB9Q9UBS3 223 aa16.14■□□□□ 0.17
VPS54-201ENST00000272322 VEGFBP49765 207 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 DOC2AQ14183 400 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 C16orf87Q6PH81 154 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 GDPD4Q6W3E5 623 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 TRAPPC5Q8IUR0 188 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 ARL10Q8N8L6 244 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 OR2A12Q8NGT7 310 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 TMEM159Q96B96 161 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 VWCEQ96DN2 955 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 PDP1Q9P0J1 537 aaPredicted RBP16.13■□□□□ 0.17
VPS54-201ENST00000272322 LOC100130705A0A1B0GUX0 176 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 C16orf96A6NNT2 1141 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 FADS2P1A8MWK0 482 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 TGFBR1P36897 503 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 TUBA4AP68366 448 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 CATSPEREQ5SY80 951 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 CYP4Z1Q86W10 505 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 CFAP206Q8IYR0 622 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 OR8J3Q8NGG0 315 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 NTMT1Q9BV86 223 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 SGK2Q9HBY8 427 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 ARHGEF33A8MVX0 844 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 POP4O95707 220 aaKnown RBP16.13■□□□□ 0.17
VPS54-201ENST00000272322 HNRNPCP07910 306 aaKnown RBP eCLIP16.13■□□□□ 0.172e-6■■□□□ 13.6
VPS54-201ENST00000272322 HNF4AP41235 474 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 VLDLRP98155 873 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 MAD2L1Q13257 205 aaPredicted RBP16.13■□□□□ 0.17
VPS54-201ENST00000272322 GALNT18Q6P9A2 607 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 TMEM220Q6QAJ8 160 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 SFTPA1Q8IWL2 248 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 ELMOD1Q8N336 334 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 SPPL2AQ8TCT8 520 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 ASB11Q8WXH4 323 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 IL17FQ96PD4 163 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 PADI4Q9UM07 663 aa16.13■□□□□ 0.17
VPS54-201ENST00000272322 PRR23AA6NEV1 266 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 K7ESM1 405 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 TULP3O75386 442 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 RPS3P23396 243 aaKnown RBP eCLIP16.12■□□□□ 0.17
VPS54-201ENST00000272322 EMP3P54852 163 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 FAM81AQ8TBF8 368 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 MBOAT4Q96T53 435 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 SORBS1Q9BX66 1292 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 OR51B5Q9H339 312 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 EPS8L2Q9H6S3 715 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 CD320Q9NPF0 282 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 THG1LQ9NWX6 298 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 KIF17Q9P2E2 1029 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 SAMHD1Q9Y3Z3 626 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 TRBV5-4A0A0C4DH59 114 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 SOCS5O75159 536 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 CYP2A7P20853 494 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 PTGER1P34995 402 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 CRATP43155 626 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 GPR153Q6NV75 609 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 TRMT11Q7Z4G4 463 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 TRIM46Q7Z4K8 759 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 RAVER1Q8IY67 606 aaKnown RBP16.12■□□□□ 0.17
VPS54-201ENST00000272322 SPASTQ9UBP0 616 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 ST14Q9Y5Y6 855 aa16.12■□□□□ 0.17
VPS54-201ENST00000272322 NAA20P61599 178 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 CYP4F2P78329 520 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 TCEAL5Q5H9L2 206 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 C6orf141Q5SZD1 244 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 DDX59Q5T1V6 619 aaKnown RBP eCLIP16.11■□□□□ 0.17
VPS54-201ENST00000272322 BROXQ5VW32 411 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 HMGN2P46Q86SG4 172 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 THOC6Q86W42 341 aaKnown RBP16.11■□□□□ 0.17
VPS54-201ENST00000272322 HORMAD1Q86X24 394 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 ADHFE1Q8IWW8 467 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 RNF168Q8IYW5 571 aaPredicted RBP16.11■□□□□ 0.17
VPS54-201ENST00000272322 ZNF740Q8NDX6 193 aa16.11■□□□□ 0.17
VPS54-201ENST00000272322 DCAF13Q9NV06 445 aaKnown RBP16.11■□□□□ 0.17
VPS54-201ENST00000272322 ORC6Q9Y5N6 252 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms