RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 DEFB123Q8N688 67 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 OR2T12Q8NG77 320 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 OR9I1Q8NGQ6 314 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 TADA1Q96BN2 335 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF556Q9HAH1 456 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF780BQ9Y6R6 833 aa11.25□□□□□ -0.61
VPS4A-201ENST00000254950 C17orf113A0A1B0GUU1 675 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 KRT36O76013 467 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 GSNP06396 782 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 VARSP26640 1264 aaKnown RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ERVPABLB-1P60509 514 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 CBLBQ13191 982 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 NDUFA9Q16795 377 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 C18orf21Q32NC0 220 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 SNAP47Q5SQN1 464 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ADAMTSL4Q6UY14 1074 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 FAM129CQ86XR2 697 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 OR4A15Q8NGL6 344 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 SPPL2AQ8TCT8 520 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 MRGPRX3Q96LB0 322 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 PKP4Q99569 1192 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 BDH2Q9BUT1 245 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 EGFL7Q9UHF1 273 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 FZD4Q9ULV1 537 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 AP4S1Q9Y587 144 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 LAMTOR5O43504 91 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 JUNDP17535 347 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 MSX2P35548 267 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 CXCL12P48061 93 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 HSPA13P48723 471 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 RALGDSQ12967 914 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ZCCHC8Q6NZY4 707 aaKnown RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ZBTB49Q6ZSB9 765 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 PDZD3Q86UT5 571 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 NUDT13Q86X67 352 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ZSWIM9Q86XI8 627 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 TREML1Q86YW5 311 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 MAPK15Q8TD08 544 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 EPHX3Q9H6B9 360 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 PLAC1Q9HBJ0 212 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 APOBEC3BQ9UH17 382 aaKnown RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 MMP17Q9ULZ9 603 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 DMTF1Q9Y222 760 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 SAP18O00422 153 aaKnown RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 LATO43561 262 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 AP1G1O43747 822 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 TBX10O75333 385 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 EFEMP2O95967 443 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 CTSLP07711 333 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 G6PDP11413 515 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ATP6V1B2P21281 511 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 BUD31P41223 144 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 PXNP49023 591 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ACADVLP49748 655 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 RPS13P62277 151 aaKnown RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ESRRGP62508 458 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 KLHDC8BQ8IXV7 354 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 FAM129BQ96TA1 746 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ROGDIQ9GZN7 287 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 CD248Q9HCU0 757 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ADAMTS6Q9UKP5 1117 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 SYNDIG1LA6NDD5 238 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 HSD3B1P14060 373 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 HSD3B2P26439 372 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 RAB28P51157 221 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 DIO3P55073 304 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 CDKL1Q00532 357 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 C1orf61Q13536 156 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 AAGABQ6PD74 315 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 Q6ZSR6 202 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ANKRD46Q86W74 232 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF555Q8NEP9 628 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 FBXO30Q8TB52 745 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF483Q8TF39 744 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 RGMAQ96B86 450 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 TIMM29Q9BSF4 260 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 TEX12Q9BXU0 123 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 LDHAL6BQ9BYZ2 381 aaPredicted RBP11.24□□□□□ -0.61
VPS4A-201ENST00000254950 KLHL4Q9C0H6 718 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 OR51B5Q9H339 312 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 MAGEL2Q9UJ55 1249 aa11.24□□□□□ -0.61
VPS4A-201ENST00000254950 H7BY64 318 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 GREM1O60565 184 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DNAJA2O60884 412 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ACADSP16219 412 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 UFM1P61960 85 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ZNF542PQ5EBM4 170 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 WLSQ5T9L3 541 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 KANK2Q63ZY3 851 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 SLC36A4Q6YBV0 504 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 LRRC74BQ6ZQY2 392 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DNAJB8Q8NHS0 232 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 ZCCHC10Q8TBK6 192 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 RLN3Q8WXF3 142 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 POP5Q969H6 163 aaKnown RBP11.23□□□□□ -0.61
VPS4A-201ENST00000254950 EXOSC8Q96B26 276 aaKnown RBP11.23□□□□□ -0.61
VPS4A-201ENST00000254950 PRAP1Q96NZ9 151 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 DUSP26Q9BV47 211 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 KLHL28Q9NXS3 571 aa11.23□□□□□ -0.61
VPS4A-201ENST00000254950 GPRC5BQ9NZH0 403 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms