RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 CCR3P51677 355 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 ZXDBP98169 803 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 B4GALNT1Q00973 533 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 DUOXA1Q1HG43 343 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 EGFLAMQ63HQ2 1017 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 FRG2Q64ET8 278 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 TXNDC8Q6A555 127 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 CAPN13Q6MZZ7 669 aaPredicted RBP18.19■□□□□ 0.5
CPSF3-201ENST00000238112 NIPAL1Q6NVV3 410 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 NOXRED1Q6NXP6 359 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 USP45Q70EL2 814 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 CEP68Q76N32 757 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 PIWIL3Q7Z3Z3 882 aaKnown RBP18.19■□□□□ 0.5
CPSF3-201ENST00000238112 METTL3Q86U44 580 aaKnown RBP18.19■□□□□ 0.5
CPSF3-201ENST00000238112 SLCO6A1Q86UG4 719 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 L3MBTL4Q8NA19 623 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 IGSF21Q96ID5 467 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 FRG2BQ96QU4 278 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 APOL4Q9BPW4 351 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 SELENONQ9NZV5 590 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 LSM7Q9UK45 103 aaKnown RBP18.19■□□□□ 0.5
CPSF3-201ENST00000238112 HSPE1-MOB4S4R3N1 261 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 SCN8AQ9UQD0 1980 aa18.19■□□□□ 0.5
CPSF3-201ENST00000238112 hCG_2039718K7EN88 272 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 CLIC1O00299 241 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 SLC22A1O15245 554 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 BNIP3LO60238 219 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 EPN2O95208 641 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 EFEMP2O95967 443 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 PRPS1L1P21108 318 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 AOAHP28039 575 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 DNAJA1P31689 397 aaKnown RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 IDUAP35475 653 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 HALP42357 657 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 TRPC1P48995 793 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 RELAQ04206 551 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 LMAN2Q12907 356 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 NPTX1Q15818 432 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 NEK5Q6P3R8 708 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 CYP2U1Q7Z449 544 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 SYT12Q8IV01 421 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 EBPLQ9BY08 206 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 WDR12Q9GZL7 423 aaKnown RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 KIF17Q9P2E2 1029 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ERVW-1Q9UQF0 538 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 SLC22A14Q9Y267 594 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 PIKFYVEQ9Y2I7 2098 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 M0R3G1 203 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ACPPP15309 386 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ENGP17813 658 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 FPR1P21462 350 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 SLC6A12P48065 614 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 HNRNPFP52597 415 aaKnown RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 VMACQ2NL98 169 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ZXDCQ2QGD7 858 aaPredicted RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 DGKKQ5KSL6 1271 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 KDM4DQ6B0I6 523 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ASB11Q8WXH4 323 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 SCRN2Q96FV2 425 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ASPSCR1Q9BZE9 553 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 REXO4Q9GZR2 422 aaKnown RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ZNF106Q9H2Y7 1883 aaKnown RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ABCB8Q9NUT2 735 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 DNAJC11Q9NVH1 559 aa18.18■□□□□ 0.5
CPSF3-201ENST00000238112 PDP1Q9P0J1 537 aaPredicted RBP18.18■□□□□ 0.5
CPSF3-201ENST00000238112 ZNF821O75541 412 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 JUNDP17535 347 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ITPKAP23677 461 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 CLK3P49761 638 aaKnown RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 EPHB3P54753 998 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 CXCR4P61073 352 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 TRIM16LQ309B1 348 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ERICH5Q6P6B1 374 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 CCDC81Q6ZN84 652 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ZNF621Q6ZSS3 439 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 RNF168Q8IYW5 571 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 GLMNQ92990 594 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 KIAA1522Q9P206 1035 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 PCDHGA10Q9Y5H3 936 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 NPIPB8E9PQR5 432 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 KPNA4O00629 521 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 NUAK1O60285 661 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 DIRAS1O95057 198 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 FKBP9O95302 570 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ALDH1A1P00352 501 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 CYP2A7P20853 494 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 FSHRP23945 695 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 MAP2K4P45985 399 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 SNRPD1P62314 119 aaKnown RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 SLC35A2P78381 396 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 SP3Q02447 781 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 SRSF11Q05519 484 aaKnown RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ABRQ12979 859 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 MTAPQ13126 283 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 FAM217AQ8IXS0 508 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 ZZZ3Q8IYH5 903 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 TTC29Q8NA56 475 aaPredicted RBP18.17■□□□□ 0.5
CPSF3-201ENST00000238112 HHIPQ96QV1 700 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 DUSP21Q9H596 190 aa18.17■□□□□ 0.5
CPSF3-201ENST00000238112 NECTIN3Q9NQS3 549 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms