RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 PTRH2Q9Y3E5 179 aaKnown RBP3.3□□□□□ -1.88
CD44-239ENST00000639002 GPR75-ASB3A0A0A6YYF3 556 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 AP3D1O14617 1153 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 TSPAN1O60635 241 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 DANCRP0C864 163 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 FOLR2P14207 255 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 CSTF2P33240 577 aaKnown RBP eCLIP3.29□□□□□ -1.88
CD44-239ENST00000639002 CDH13P55290 713 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 HSP90AB4PQ58FF6 505 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 PLEKHS1Q5SXH7 462 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 GORABQ5T7V8 394 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 TMEM211Q6ICI0 200 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 LEKR1Q6ZMV7 388 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 GDPGP1Q6ZNW5 385 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 EXD1Q8NHP7 514 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 ZPLD1Q8TCW7 415 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 SLC45A3Q96JT2 553 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 MS4A10Q96PG2 267 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 SPAG5Q96R06 1193 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 NKX3-1Q99801 234 aaPredicted RBP3.29□□□□□ -1.88
CD44-239ENST00000639002 CCDC3Q9BQI4 270 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 RPP25Q9BUL9 199 aaKnown RBP3.29□□□□□ -1.88
CD44-239ENST00000639002 OSGEPL1Q9H4B0 414 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 TRPV4Q9HBA0 871 aa3.29□□□□□ -1.88
CD44-239ENST00000639002 LOC105371242A0A075B767 164 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 ACOD1A6NK06 481 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 ASB14A6NK59 587 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 SNURFLB1AK76 121 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 FPGTO14772 594 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 IL4RP24394 825 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 MPZP25189 248 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 LBX1P52954 281 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 PSMC6P62333 389 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 ZFP36L1Q07352 338 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 CD300CQ08708 224 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 DDX10Q13206 875 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 PCLAFQ15004 111 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 CES4AQ5XG92 561 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 GUF1Q8N442 669 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 POC5Q8NA72 575 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 THAP8Q8NA92 274 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 FAM120BQ96EK7 910 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 CNRIP1Q96F85 164 aaPredicted RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 OVOL2Q9BRP0 275 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 TDRD1Q9BXT4 1180 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 PUS3Q9BZE2 481 aaKnown RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 TLE6Q9H808 572 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 EQTNQ9NQ60 294 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 SLC35C2Q9NQQ7 365 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 PSD3Q9NYI0 1048 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 THAP10Q9P2Z0 257 aaPredicted RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 CTSZQ9UBR2 303 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 ZNF215Q9UL58 517 aaPredicted RBP3.28□□□□□ -1.88
CD44-239ENST00000639002 ZNF510Q9Y2H8 683 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 TMED3Q9Y3Q3 217 aa3.28□□□□□ -1.88
CD44-239ENST00000639002 CREB3O43889 395 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 GJB3O75712 270 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 IGHV2-70P01814 119 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 HAPLN1P10915 354 aaPredicted RBP3.27□□□□□ -1.89
CD44-239ENST00000639002 CAPN3P20807 821 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 DNASE1P24855 282 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 CDC25CP30307 473 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 ETV5P41161 510 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 SOX3P41225 446 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 NRIP1P48552 1158 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 CREB5Q02930 508 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 C11orf63Q6NUN7 778 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 C1orf122Q6ZSJ8 110 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 SZRD1Q7Z422 152 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 ARHGAP22Q7Z5H3 698 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 MMD2Q8IY49 270 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 CHPT1Q8WUD6 406 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 SPDL1Q96EA4 605 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 ATXN7L3BQ96GX2 97 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 CHCHD6Q9BRQ6 235 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 WNT5BQ9H1J7 359 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 OPA3Q9H6K4 179 aa3.27□□□□□ -1.89
CD44-239ENST00000639002 FBXO2Q9UK22 296 aaPredicted RBP3.27□□□□□ -1.89
CD44-239ENST00000639002 MEIS2O14770 477 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 HPRP00739 348 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 IGKV3-15P01624 115 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 HOXD4P09016 255 aaPredicted RBP3.26□□□□□ -1.89
CD44-239ENST00000639002 DUX4L4P0CJ87 422 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 THEGLP0DJG4 465 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 GP1BBP13224 206 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 GJA1P17302 382 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 GCH1P30793 250 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 TSFMP43897 325 aaKnown RBP3.26□□□□□ -1.89
CD44-239ENST00000639002 TRA2BP62995 288 aaKnown RBP3.26□□□□□ -1.89
CD44-239ENST00000639002 MC1RQ01726 317 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 C15orf32Q32M92 178 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 SEL1L3Q68CR1 1132 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 NUP54Q7Z3B4 507 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.26□□□□□ -1.89
CD44-239ENST00000639002 LPGAT1Q92604 370 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 MYH16Q9H6N6 1097 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 SYNCQ9H7C4 482 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 PADI2Q9Y2J8 665 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 WIPI2Q9Y4P8 454 aa3.26□□□□□ -1.89
CD44-239ENST00000639002 NEMP2A6NFY4 417 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms