RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 DMTF1Q9Y222 760 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 DYRK1BQ9Y463 629 aa16.33■□□□□ 0.2
CLN3-252ENST00000636907 VARSP26640 1264 aaKnown RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 AK4P27144 223 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 RABIFP47224 123 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 NUDT2P50583 147 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SRP54P61011 504 aaKnown RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 IRX1P78414 480 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 CTBSQ01459 385 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 TCEA2Q15560 299 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 IMPG1Q17R60 797 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 ALG11Q2TAA5 492 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 RFTN2Q52LD8 501 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 FBXW10Q5XX13 1052 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 FRG2Q64ET8 278 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 GRHL2Q6ISB3 625 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SLCO4C1Q6ZQN7 724 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 TMPRSS11BQ86T26 416 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SLC22A18ASQ8N1D0 253 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SPEM1Q8N4L4 309 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 C2orf73Q8N5S3 287 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 CLDN23Q96B33 292 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SLC45A3Q96JT2 553 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 FRG2BQ96QU4 278 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 ORAI3Q9BRQ5 295 aa16.32■□□□□ 0.2
CLN3-252ENST00000636907 SCHIP1Q9P0W5 487 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.32■□□□□ 0.2
CLN3-252ENST00000636907 OR52A4PA6NMU1 304 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 TOR1BO14657 336 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 PI15O43692 258 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 SNRPB2P08579 225 aaKnown RBP16.31■□□□□ 0.2
CLN3-252ENST00000636907 SLC2A4P14672 509 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 HNF4AP41235 474 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 CASP2P42575 452 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 RPL38P63173 70 aaKnown RBP16.31■□□□□ 0.2
CLN3-252ENST00000636907 E2F2Q14209 437 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 ARHGAP19Q14CB8 494 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 CYP2A13Q16696 494 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 PDCD4Q53EL6 469 aaKnown RBP16.31■□□□□ 0.2
CLN3-252ENST00000636907 CATSPEREQ5SY80 951 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 CYB5D1Q6P9G0 228 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 KYQ8NBH2 561 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 FAM13CQ8NE31 585 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 CCL4L1Q8NHW4 92 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 WDR20Q8TBZ3 569 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 SLC5A11Q8WWX8 675 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 SNX19Q92543 992 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 NPAS2Q99743 824 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 THTPAQ9BU02 230 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 TMEM168Q9H0V1 697 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 LRTM1Q9HBL6 345 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 SPATA7Q9P0W8 599 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 THEGQ9P2T0 379 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 POLR3HQ9Y535 204 aaPredicted RBP16.31■□□□□ 0.2
CLN3-252ENST00000636907 SLCO1B1Q9Y6L6 691 aa16.31■□□□□ 0.2
CLN3-252ENST00000636907 SEC23IPQ9Y6Y8 1000 aaKnown RBP16.31■□□□□ 0.2
CLN3-252ENST00000636907 A0A1W2PPC4 97 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 SERTM1A2A2V5 107 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 H0YIV9 168 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 FBP2O00757 339 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 RASGRP1O95267 797 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 CCND1P24385 295 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 NUDT1P36639 197 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 HSD17B2P37059 387 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 UFM1P61960 85 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 GRIK2Q13002 908 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 MTAPQ13126 283 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 STX5Q13190 355 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 RPE65Q16518 533 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 SMU1Q2TAY7 513 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 PRAMEF14Q5SWL7 426 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 THEMIS2Q5TEJ8 643 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 IL23RQ5VWK5 629 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 PRAMEF13Q5VWM6 474 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 LCTLQ6UWM7 567 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 HID1Q8IV36 788 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 DEFB107AQ8IZN7 70 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 DSELQ8IZU8 1212 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 RNF175Q8N4F7 328 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 SETD7Q8WTS6 366 aaKnown RBP16.3■□□□□ 0.2
CLN3-252ENST00000636907 CLPTM1LQ96KA5 538 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 TEX37Q96LM6 180 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 CAMK1GQ96NX5 476 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 SLC25A23Q9BV35 468 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 MMADHCQ9H3L0 296 aaPredicted RBP16.3■□□□□ 0.2
CLN3-252ENST00000636907 CAAP1Q9H8G2 361 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 EFCAB1Q9HAE3 211 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 TBC1D29Q9UFV1 150 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 C9JVG2 144 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 NR5A2O00482 541 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 SEC22BO75396 215 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 EML2O95834 649 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 G6PDP11413 515 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 LRP8Q14114 963 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 ATG9BQ674R7 924 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 REP15Q6BDI9 236 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 ZFAND4Q86XD8 727 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 ARHGAP24Q8N264 748 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 WDR34Q96EX3 536 aa16.3■□□□□ 0.2
CLN3-252ENST00000636907 MVB12BQ9H7P6 319 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms