RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 GPN2Q9H9Y4 310 aaPredicted RBP17.2■□□□□ 0.34
CLN3-247ENST00000636351 SOHLH2Q9NX45 425 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 SPATA7Q9P0W8 599 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 LNPEPQ9UIQ6 1025 aa17.2■□□□□ 0.34
CLN3-247ENST00000636351 LOC101059948A0A1B0GTJ6 334 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 EXOC1LA0A1B0GW35 172 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 ISM1B1AKI9 464 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 PHGDHO43175 533 aaKnown RBP17.19■□□□□ 0.34
CLN3-247ENST00000636351 RIPK2O43353 540 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 ABHD2P08910 425 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 ANKRD34CP0C6C1 535 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 TPBGLP0DKB5 382 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 PRKAR1AP10644 381 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 UGT2B7P16662 529 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 VSNL1P62760 191 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 MC2RQ01718 297 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 SP140Q13342 867 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 TSTA3Q13630 321 aaPredicted RBP17.19■□□□□ 0.34
CLN3-247ENST00000636351 BMPR2Q13873 1038 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 GRB7Q14451 532 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 SPESP1Q6UW49 350 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 CYHR1Q6ZMK1 362 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 RAPH1Q70E73 1250 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 TRIM73Q86UV7 250 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 NLGN4XQ8N0W4 816 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 NKAPQ8N5F7 415 aaKnown RBP17.19■□□□□ 0.34
CLN3-247ENST00000636351 LMNTD1Q8N9Z9 388 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 NLGN4YQ8NFZ3 816 aaPredicted RBP17.19■□□□□ 0.34
CLN3-247ENST00000636351 OR2L8Q8NGY9 312 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 UBLCP1Q8WVY7 318 aaPredicted RBP17.19■□□□□ 0.34
CLN3-247ENST00000636351 SLC45A3Q96JT2 553 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 CATSPER2Q96P56 530 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 PAFAH2Q99487 392 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 FUT8Q9BYC5 575 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 SPRY4Q9C004 299 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 EPN3Q9H201 632 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 POPDC3Q9HBV1 291 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 SYTL2Q9HCH5 934 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 APMAPQ9HDC9 416 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 SPHK1Q9NYA1 384 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 TUBD1Q9UJT1 453 aa17.19■□□□□ 0.34
CLN3-247ENST00000636351 IGHV5-51A0A0C4DH38 117 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 MYO1CO00159 1063 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 TOX3O15405 576 aaPredicted RBP17.18■□□□□ 0.34
CLN3-247ENST00000636351 TSPAN12O95859 305 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 PRDX3P30048 256 aaKnown RBP17.18■□□□□ 0.34
CLN3-247ENST00000636351 MSH2P43246 934 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 RAB10P61026 200 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 SRSF1Q07955 248 aaKnown RBP eCLIP17.18■□□□□ 0.34
CLN3-247ENST00000636351 KIR2DS3Q14952 304 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 MROH9Q5TGP6 573 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 FBXO38Q6PIJ6 1188 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 TMEM207Q6UWW9 146 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 CEACAM20Q6UY09 585 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 TIPARPQ7Z3E1 657 aaKnown RBP17.18■□□□□ 0.34
CLN3-247ENST00000636351 MCOLN3Q8TDD5 553 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 SLC44A1Q8WWI5 657 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.18■□□□□ 0.345e-8■■■■■ 65.3
CLN3-247ENST00000636351 KIAA1143Q96AT1 154 aaPredicted RBP17.18■□□□□ 0.34
CLN3-247ENST00000636351 PPM1MQ96MI6 270 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 PKP4Q99569 1192 aa17.18■□□□□ 0.34
CLN3-247ENST00000636351 FLNCQ14315 2725 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 NPEPPSL1A6NEC2 478 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 ZNF839A8K0R7 811 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 GFYI3L273 518 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 STK17BO94768 372 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 CDC20Q12834 499 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 ERCC6LQ2NKX8 1250 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 CMC1Q7Z7K0 106 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 SYTL1Q8IYJ3 562 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 LINC01555Q8NAE3 123 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 C9orf43Q8TAL5 461 aaPredicted RBP17.17■□□□□ 0.34
CLN3-247ENST00000636351 DENND1AQ8TEH3 1009 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 SLC22A18Q96BI1 424 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 MENTQ9BUN1 341 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 TXLNGYQ9BZA5 131 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 KLHL25Q9H0H3 589 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 ZNF71Q9NQZ8 489 aaPredicted RBP17.17■□□□□ 0.34
CLN3-247ENST00000636351 FBXO8Q9NRD0 319 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 ADAMTS6Q9UKP5 1117 aa17.17■□□□□ 0.34
CLN3-247ENST00000636351 A0A0J9YY10 115 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 SLC9B1P1A6NJY1 282 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 SLC16A5O15375 505 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 MAP3K7O43318 606 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 ZBTB11O95625 1053 aaPredicted RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 HIST1H2AGP0C0S8 130 aaPredicted RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 PVRP15151 417 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 HIST1H2ADP20671 130 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 OAS2P29728 719 aaKnown RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 PEBP1P30086 187 aaKnown RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 SERPINB8P50452 374 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 SERPINB9P50453 376 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 PNLIPRP1P54315 467 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 FOXM1Q08050 763 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 FRA10AC1Q70Z53 315 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 KMT5CQ86Y97 462 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 CARFQ8N187 725 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 FBXO15Q8NCQ5 510 aaPredicted RBP17.16■□□□□ 0.34
CLN3-247ENST00000636351 ANKRD49Q8WVL7 239 aa17.16■□□□□ 0.34
CLN3-247ENST00000636351 KLHL6Q8WZ60 621 aa17.16■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms