RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 MAGEA12P43365 314 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 TUBB3Q13509 450 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 IL11RAQ14626 422 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 TAF1BQ53T94 588 aaPredicted RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 ADGRD1Q6QNK2 874 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 CEACAM20Q6UY09 585 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 FAM20CQ8IXL6 584 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 SPATA6LQ8N4H0 392 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 KDF1Q8NAX2 398 aaPredicted RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 OR2L3Q8NG85 312 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 SNIP1Q8TAD8 396 aaKnown RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 TCTN2Q96GX1 697 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 ZPBPQ9BS86 351 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 UNKQ9C0B0 810 aaKnown RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 INTS7Q9NVH2 962 aaKnown RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 FOXJ2Q9P0K8 574 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 ACSL6Q9UKU0 697 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 RAB21Q9UL25 225 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 ACOT9Q9Y305 439 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 B3GALT1Q9Y5Z6 326 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 MDC1Q14676 2089 aaKnown RBP19.56■□□□□ 0.72
PTCD3-220ENST00000627371 DMXL2Q8TDJ6 3036 aa19.56■□□□□ 0.72
PTCD3-220ENST00000627371 A0A096LPK6 155 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TLX3O43711 291 aaPredicted RBP19.55■□□□□ 0.72
PTCD3-220ENST00000627371 KRT37O76014 449 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 GUCA1CO95843 209 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TUBBP07437 444 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 LTA4HP09960 611 aaKnown RBP19.55■□□□□ 0.72
PTCD3-220ENST00000627371 MSL3P1P0C860 447 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 FGF5P12034 268 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 MAGP20916 626 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 GMPRP36959 345 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TBPL1P62380 186 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CDKL1Q00532 357 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 DLG1Q12959 904 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TSTA3Q13630 321 aaPredicted RBP19.55■□□□□ 0.72
PTCD3-220ENST00000627371 ZIC1Q15915 447 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 KIAA1614Q5VZ46 1190 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 AGTRAPQ6RW13 159 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 FRA10AC1Q70Z53 315 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 PROSER1Q86XN7 944 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 ATL1Q8WXF7 558 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 FGF11Q92914 225 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CAVIN3Q969G5 261 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 FBXL8Q96CD0 374 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CNTNAP3BQ96NU0 1288 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 MIPEPQ99797 713 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CTRCQ99895 268 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CCDC77Q9BR77 488 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CNTNAP3Q9BZ76 1288 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 CCDC177Q9NQR7 707 aaPredicted RBP19.55■□□□□ 0.72
PTCD3-220ENST00000627371 FGF21Q9NSA1 209 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 UTP6Q9NYH9 597 aaKnown RBP19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TAC3Q9UHF0 121 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TLK1Q9UKI8 766 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 KLK4Q9Y5K2 254 aa19.55■□□□□ 0.72
PTCD3-220ENST00000627371 TRIM49D1C9J1S8 452 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 SNRPAP09012 282 aaKnown RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 CD82P27701 267 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 CMPK1P30085 196 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 HSD17B3P37058 310 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 PCBP4P57723 403 aaKnown RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 NAA25Q14CX7 972 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 LGSNQ5TDP6 509 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 CDHR3Q6ZTQ4 885 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 BPHLQ86WA6 291 aaPredicted RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 CENPLQ8N0S6 344 aaPredicted RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 CNPY4Q8N129 248 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 KIAA1191Q96A73 305 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 PTERQ96BW5 349 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 ZNF501Q96CX3 271 aaPredicted RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 MTBPQ96DY7 904 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 ACAT2Q9BWD1 397 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 ATG10Q9H0Y0 220 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 FANCEQ9HB96 536 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 NMRAL1Q9HBL8 299 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 FAM60AQ9NP50 221 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 IGSF5Q9NSI5 407 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 PSMC3IPQ9P2W1 217 aaPredicted RBP19.54■□□□□ 0.72
PTCD3-220ENST00000627371 RARRES3Q9UL19 164 aa19.54■□□□□ 0.72
PTCD3-220ENST00000627371 URB1O60287 2271 aaKnown RBP19.53■□□□□ 0.72
PTCD3-220ENST00000627371 TARM1B6A8C7 271 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 CCNDBP1O95273 360 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 SHBGP04278 402 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 ANXA5P08758 320 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 CCND1P24385 295 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 GRIA3P42263 894 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 IRF9Q00978 393 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 TGFBIQ15582 683 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 OR4D1Q15615 310 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 GPR19Q15760 415 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 ZXDCQ2QGD7 858 aaPredicted RBP19.53■□□□□ 0.72
PTCD3-220ENST00000627371 PRAMEF13Q5VWM6 474 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 ICE2Q659A1 982 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 FIGLAQ6QHK4 219 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 PPP1R3BQ86XI6 285 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 OR8K5Q8NH50 307 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 OR56A3Q8NH54 315 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 KCTD4Q8WVF5 259 aa19.53■□□□□ 0.72
PTCD3-220ENST00000627371 ZUFSPQ96AP4 578 aa19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms