RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 TSTA3Q13630 321 aaPredicted RBP16.21■□□□□ 0.19
TRIM28-215ENST00000601150 NAA25Q14CX7 972 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 DEFB110Q30KQ9 67 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 KBTBD12Q3ZCT8 623 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 FIGLAQ6QHK4 219 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 CTAGE3PQ8IX95 158 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 SYTL1Q8IYJ3 562 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 GPR135Q8IZ08 494 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 FBF1Q8TES7 1133 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 DLG3Q92796 817 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 ZUFSPQ96AP4 578 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 PDLIM5Q96HC4 596 aaKnown RBP16.21■□□□□ 0.19
TRIM28-215ENST00000601150 RBBP8Q99708 897 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 PARVBQ9HBI1 364 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 POPDC3Q9HBV1 291 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 PDE10AQ9Y233 779 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 PCDHGA4Q9Y5G9 962 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 KLK4Q9Y5K2 254 aa16.21■□□□□ 0.19
TRIM28-215ENST00000601150 HEATR5BQ9P2D3 2071 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 PABPN1LA6NDY0 278 aaKnown RBP16.2■□□□□ 0.18
TRIM28-215ENST00000601150 E7ENX8 843 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 E7EQ34 232 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 HCRTR1O43613 425 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 OR2B3O76000 313 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 CCNDBP1O95273 360 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 GRIA3P42263 894 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 POU4F1Q01851 419 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 TAP2Q03519 686 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 NAB1Q13506 487 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 ZC3H12BQ5HYM0 836 aaKnown RBP16.2■□□□□ 0.18
TRIM28-215ENST00000601150 FCRL6Q6DN72 434 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 SUSD1Q6UWL2 747 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 TMEM207Q6UWW9 146 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 RELL1Q8IUW5 271 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 NKAPQ8N5F7 415 aaKnown RBP16.2■□□□□ 0.18
TRIM28-215ENST00000601150 PPM1NQ8N819 430 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 PPFIBP2Q8ND30 876 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 CLIP3Q96DZ5 547 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 TSPAN17Q96FV3 270 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 CCDC138Q96M89 665 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 LRFN5Q96NI6 719 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 FMO2Q99518 471 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 ACAT2Q9BWD1 397 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 TRIM54Q9BYV2 358 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 ACTR5Q9H9F9 607 aaPredicted RBP16.2■□□□□ 0.18
TRIM28-215ENST00000601150 LHX9Q9NQ69 397 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 MTO1Q9Y2Z2 717 aaKnown RBP16.2■□□□□ 0.18
TRIM28-215ENST00000601150 CHD6Q8TD26 2715 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 NBEAQ8NFP9 2946 aa16.2■□□□□ 0.18
TRIM28-215ENST00000601150 LAMA5O15230 3695 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 HBQ1P09105 142 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 HIST1H2AGP0C0S8 130 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 HIST1H2ADP20671 130 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 IMPA1P29218 277 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 PHBP35232 272 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 SPRP35270 261 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 DLSTP36957 453 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF460Q14592 562 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 GRTP1Q5TC63 336 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 PRAMEF17Q5VTA0 474 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 MCATQ8IVS2 390 aaKnown RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 CEP97Q8IW35 865 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 ANKRD7Q92527 254 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 SLC45A3Q96JT2 553 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 HIST1H2AHQ96KK5 128 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 GPR22Q99680 433 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 HIST1H2AJQ99878 128 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 H2AFJQ9BTM1 129 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 SLC7A5P2Q9GIP4 190 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 SPRTNQ9H040 489 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 MRPS30Q9NP92 439 aaKnown RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 EURLQ9NYK6 297 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 NINJ2Q9NZG7 142 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 STOX2Q9P2F5 926 aaPredicted RBP16.19■□□□□ 0.18
TRIM28-215ENST00000601150 TAC3Q9UHF0 121 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 CROTQ9UKG9 612 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 AP1M2Q9Y6Q5 423 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 CFAP47Q6ZTR5 3102 aa16.19■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF891A8MT65 544 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 H3BMH7 237 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 ZNF749O43361 778 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 KLK3P07288 261 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 ENO2P09104 434 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 AP1S2P56377 157 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 PRDX1Q06830 199 aaKnown RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 GPS2Q13227 327 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 USP10Q14694 798 aaKnown RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 PHKG1Q16816 387 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 THEMIS2Q5TEJ8 643 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 ICE2Q659A1 982 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 TLDC1Q6P9B6 456 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 IFT20Q8IY31 132 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 LRRC56Q8IYG6 542 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 SLC38A9Q8NBW4 561 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 CT55Q8WUE5 264 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 DPH7Q9BTV6 452 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 GPAMQ9HCL2 828 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 SLC6A20Q9NP91 592 aa16.18■□□□□ 0.18
TRIM28-215ENST00000601150 CCDC177Q9NQR7 707 aaPredicted RBP16.18■□□□□ 0.18
TRIM28-215ENST00000601150 ABCF3Q9NUQ8 709 aa16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms