RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 RAB28P51157 221 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 ABCA11PQ4W5N1 156 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 ILDR1Q86SU0 546 aaPredicted RBP19.99■□□□□ 0.79
UPF1-207ENST00000599848 OR2L3Q8NG85 312 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 CLK4Q9HAZ1 481 aaKnown RBP19.99■□□□□ 0.79
UPF1-207ENST00000599848 RHOP08100 348 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 GADD45AP24522 165 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 CLCN4P51793 760 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 RASGEF1CQ8N431 466 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 SLC13A3Q8WWT9 602 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 PCDHB18PQ96TA0 734 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 XPNPEP1Q9NQW7 623 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 GHRLQ9UBU3 117 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 SLIT2O94813 1529 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 A8MUA0 341 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 ADAMTS3O15072 1205 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 MECP2P51608 486 aaKnown RBP19.99■□□□□ 0.79
UPF1-207ENST00000599848 ADAM8P78325 824 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 MPP1Q00013 466 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 NFKB2Q00653 900 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 KIAA1161Q6NSJ0 714 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 CHID1Q9BWS9 393 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 CDC7O00311 574 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 TCEA1P23193 301 aaKnown RBP19.99■□□□□ 0.79
UPF1-207ENST00000599848 SLC1A2P43004 574 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 ASPAP45381 313 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 PACS2Q86VP3 889 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 STX12Q86Y82 276 aa19.99■□□□□ 0.79
UPF1-207ENST00000599848 MAP3K8P41279 467 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 MARCKSL1P49006 195 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 ZNF84P51523 738 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 PITPNAQ00169 270 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 MS4A13Q5J8X5 152 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 ARL9Q6T311 187 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 ZER1Q7Z7L7 766 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 PNPT1Q8TCS8 783 aaKnown RBP19.98■□□□□ 0.79
UPF1-207ENST00000599848 TRIM39Q9HCM9 518 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 BCKDKO14874 412 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 CPNE3O75131 537 aaKnown RBP19.98■□□□□ 0.79
UPF1-207ENST00000599848 THRBP10828 461 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 MLLT6P55198 1093 aaPredicted RBP19.98■□□□□ 0.79
UPF1-207ENST00000599848 RBPJQ06330 500 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 KLF10Q13118 480 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 CMTM8Q8IZV2 173 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 SCAMP5Q8TAC9 235 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 BADQ92934 168 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 SPHK2Q9NRA0 654 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 TIMM22Q9Y584 194 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 BACE2Q9Y5Z0 518 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 OR1I1O60431 355 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 MTTPP55157 894 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 TNFAIP8L3Q5GJ75 292 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 PYHIN1Q6K0P9 492 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 KXD1Q9BQD3 176 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 ENY2Q9NPA8 101 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 TRPV5Q9NQA5 729 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 PGM3O95394 542 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 MPSTP25325 297 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 ZNF805Q5CZA5 627 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 CCSER2Q9H7U1 834 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 TAC3Q9UHF0 121 aa19.98■□□□□ 0.79
UPF1-207ENST00000599848 FBLP22087 321 aaKnown RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 DSTNP60981 165 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 SLC10A7Q0GE19 358 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 PRRT3Q5FWE3 981 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 PGAM4Q8N0Y7 254 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 DNAJA4Q8WW22 397 aaPredicted RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 NAA11Q9BSU3 229 aaPredicted RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 EDARQ9UNE0 448 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 COL3A1P02461 1466 aaPredicted RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 E2F3O00716 465 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 BMPR1AP36894 532 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 CCT3P49368 545 aaKnown RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 PLEKHG6Q3KR16 790 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 G6PC3Q9BUM1 346 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 COQ4Q9Y3A0 265 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 NUAK1O60285 661 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 FHP07954 510 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 OR4E2Q8NGC2 313 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 NINJ1Q92982 152 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 NRG1Q02297 640 aaPredicted RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 PLEKHS1Q5SXH7 462 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 VASH1Q7L8A9 365 aaPredicted RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 OR9A1PQ8NGU1 263 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 WDR12Q9GZL7 423 aaKnown RBP19.97■□□□□ 0.79
UPF1-207ENST00000599848 RNPEPL1Q9HAU8 725 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 PNPOQ9NVS9 261 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 IFT52Q9Y366 437 aa19.97■□□□□ 0.79
UPF1-207ENST00000599848 PIGBOS1A0A0B4J2F0 54 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 A0A1W2PRG6 482 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 SCAMP1O15126 338 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 DDX3YO15523 660 aaKnown RBP19.96■□□□□ 0.79
UPF1-207ENST00000599848 HRGP04196 525 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 PSMA8Q8TAA3 256 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 SLC5A11Q8WWX8 675 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 CPT1BQ92523 772 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 C11orf24Q96F05 449 aaPredicted RBP19.96■□□□□ 0.79
UPF1-207ENST00000599848 HERPUD2Q9BSE4 406 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 NKX2-4Q9H2Z4 354 aa19.96■□□□□ 0.79
UPF1-207ENST00000599848 NTSR1P30989 418 aa19.96■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms