RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 DTWD1Q8N5C7 304 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 AADATQ8N5Z0 425 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 OR56A3Q8NH54 315 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 ZNF480Q8WV37 535 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 AURKBQ96GD4 344 aaPredicted RBP14.03□□□□□ -0.16
VRK3-217ENST00000599538 ZNF583Q96ND8 569 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 OR52E6Q96RD3 313 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 LGR4Q9BXB1 951 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 TRIM39Q9HCM9 518 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 SCOCQ9UIL1 159 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 F5P12259 2224 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 EME2A4GXA9 379 aaPredicted RBP14.03□□□□□ -0.16
VRK3-217ENST00000599538 MID1O15344 667 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 POP7O75817 140 aaKnown RBP14.03□□□□□ -0.16
VRK3-217ENST00000599538 GDI1P31150 447 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 CLDN8P56748 225 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 FXNQ16595 210 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 C2orf27AQ580R0 203 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 UGT2A3Q6UWM9 527 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 ZNF765Q7L2R6 523 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 EPHX4Q8IUS5 362 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 CATSPER1Q8NEC5 780 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 NEIL2Q969S2 332 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 CMTM7Q96FZ5 175 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 INPP5KQ9BT40 448 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 EPHX3Q9H6B9 360 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 SERHLQ9NQF3 203 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 DZANK1Q9NVP4 752 aa14.03□□□□□ -0.16
VRK3-217ENST00000599538 C15orf38-AP3S2A0A0A6YYH1 394 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 IGLON5A6NGN9 336 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 SAC3D1A6NKF1 404 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PDLIM1O00151 329 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 SOCS2O14508 198 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 DENRO43583 198 aaKnown RBP14.02□□□□□ -0.16
VRK3-217ENST00000599538 IL6P05231 212 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 GSNP06396 782 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PRPH2P23942 346 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 CDKN2CP42773 168 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PRKCQQ04759 706 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 TSTA3Q13630 321 aaPredicted RBP14.02□□□□□ -0.16
VRK3-217ENST00000599538 INPP5AQ14642 412 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 SPATS1Q496A3 300 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PYCR3Q53H96 274 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 LIPJQ5W064 366 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 GLYATQ6IB77 296 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 NOXRED1Q6NXP6 359 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 DOK6Q6PKX4 331 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 TRMT11Q7Z4G4 463 aaKnown RBP14.02□□□□□ -0.16
VRK3-217ENST00000599538 ARPINQ7Z6K5 226 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PHACTR4Q8IZ21 702 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 GLB1L3Q8NCI6 653 aaPredicted RBP14.02□□□□□ -0.16
VRK3-217ENST00000599538 OR10A6Q8NH74 314 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 CXorf40AQ8TE69 158 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 MIEF2Q96C03 454 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 BIRC7Q96CA5 298 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 CNBD2Q96M20 576 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 EFHD1Q9BUP0 239 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 TRIM15Q9C019 465 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 TM7SF3Q9NS93 570 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 SLC23A2Q9UGH3 650 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 STON1Q9Y6Q2 735 aa14.02□□□□□ -0.16
VRK3-217ENST00000599538 PCM1Q15154 2024 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 KANSL1LA0AUZ9 987 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 ARHGAP10A1A4S6 786 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 C1QTNF3-AMACRE9PGA6 284 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 PSMA4P25789 261 aaKnown RBP14.02□□□□□ -0.17
VRK3-217ENST00000599538 DLX2Q07687 328 aaPredicted RBP14.02□□□□□ -0.17
VRK3-217ENST00000599538 CATSPEREQ5SY80 951 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 RNF220Q5VTB9 566 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 ANKRD54Q6NXT1 300 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 YAF2Q8IY57 180 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 CHPFQ8IZ52 775 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 EZH1Q92800 747 aaPredicted RBP14.02□□□□□ -0.17
VRK3-217ENST00000599538 FOPNLQ96NB1 174 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 SEPHS2Q99611 448 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 HDAC8Q9BY41 377 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 PAIP1Q9H074 479 aaKnown RBP14.02□□□□□ -0.17
VRK3-217ENST00000599538 LMAN2LQ9H0V9 348 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 AGPAT4Q9NRZ5 378 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 GPRC5BQ9NZH0 403 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.02□□□□□ -0.17
VRK3-217ENST00000599538 PCDHB14Q9Y5E9 798 aa14.02□□□□□ -0.17
VRK3-217ENST00000599538 TRBV5-3A0A0A0MS03 114 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 MYOCOSA0A1B0GUC4 107 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 MAGEB17A8MXT2 336 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 PCCBP05166 539 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 BMP2P12643 396 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 TBPL1P62380 186 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 STARD3Q14849 445 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 PGS1Q32NB8 556 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 AGBL4Q5VU57 503 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 IRAK1BP1Q5VVH5 260 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 CAPRIN2Q6IMN6 1127 aaKnown RBP14.01□□□□□ -0.17
VRK3-217ENST00000599538 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP14.01□□□□□ -0.17
VRK3-217ENST00000599538 HEATR4Q86WZ0 1026 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 RIMKLAQ8IXN7 391 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 SYTL1Q8IYJ3 562 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 MARVELD2Q8N4S9 558 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 ANKFN1Q8N957 763 aa14.01□□□□□ -0.17
VRK3-217ENST00000599538 TRPV3Q8NET8 790 aa14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms