RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 IVDP26440 423 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 PNLIPRP1P54315 467 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 DCDP81605 110 aaKnown RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 CAV1Q03135 178 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 NFATC3Q12968 1075 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 CUL1Q13616 776 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 GRB7Q14451 532 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 GBX1Q14549 363 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 GRM7Q14831 915 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 CYP2A13Q16696 494 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 HP1BP3Q5SSJ5 553 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 MLIPQ5VWP3 458 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 UBE2R2Q712K3 238 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 GALNT7Q86SF2 657 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 DNAJC22Q8N4W6 341 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 ZNF655Q8N720 491 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 FBXO15Q8NCQ5 510 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 PYROXD1Q8WU10 500 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 CDKL2Q92772 493 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 MIPEPQ99797 713 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 SELENOSQ9BQE4 189 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 ERP44Q9BS26 406 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 SPRTNQ9H040 489 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 SLC25A18Q9H1K4 315 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 MRPS30Q9NP92 439 aaKnown RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 PCMTD2Q9NV79 361 aa13.6□□□□□ -0.23
LIG1-218ENST00000599322 IFT80Q9P2H3 777 aaPredicted RBP13.6□□□□□ -0.23
LIG1-218ENST00000599322 ARHGEF33A8MVX0 844 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 MYO1CO00159 1063 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 BANF1O75531 89 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 C8GP07360 202 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 MCM3P25205 808 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 PEBP1P30086 187 aaKnown RBP13.59□□□□□ -0.23
LIG1-218ENST00000599322 IL2P60568 153 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ABATP80404 500 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 MGAT5Q09328 741 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ZIC1Q15915 447 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 UGT8Q16880 541 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 PTCHD3Q3KNS1 767 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 MSS51Q4VC12 460 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 PRAMEF17Q5VTA0 474 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 FAM45BPQ6NSW5 357 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 RHBDD2Q6NTF9 364 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ZNF549Q6P9A3 640 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 RAB43Q86YS6 212 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ANKMY2Q8IV38 441 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 CNTN4Q8IWV2 1026 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 CPNE9Q8IYJ1 553 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 AGGF1Q8N302 714 aaeCLIP13.59□□□□□ -0.23
LIG1-218ENST00000599322 ENDOVQ8N8Q3 282 aaKnown RBP13.59□□□□□ -0.23
LIG1-218ENST00000599322 GPATCH11Q8N954 259 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 EXD3Q8N9H8 876 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 FBXO36Q8NEA4 188 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 OR2L3Q8NG85 312 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 FLVCR1-AS1Q8TAF5 88 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 C9orf43Q8TAL5 461 aaPredicted RBP13.59□□□□□ -0.23
LIG1-218ENST00000599322 FAM45AQ8TCE6 357 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ASB11Q8WXH4 323 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 VPS39Q96JC1 886 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 IP6K3Q96PC2 410 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 NDNQ99608 321 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 MENTQ9BUN1 341 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ACAT2Q9BWD1 397 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 DPH5Q9H2P9 285 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 WHRNQ9P202 907 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 ANKMY1Q9P2S6 941 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 GALPQ9UBC7 116 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 TEX264Q9Y6I9 313 aa13.59□□□□□ -0.23
LIG1-218ENST00000599322 TERTO14746 1132 aaKnown RBP13.58□□□□□ -0.24
LIG1-218ENST00000599322 EIF3HO15372 352 aaKnown RBP eCLIP13.58□□□□□ -0.24
LIG1-218ENST00000599322 SLC16A5O15375 505 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 RFPL1O75677 317 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 IGHEP01854 428 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 AHSGP02765 367 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 RORAP35398 523 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 GRIA3P42263 894 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 SLC12A2P55011 1212 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 RRADP55042 308 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 FRG1Q14331 258 aaKnown RBP13.58□□□□□ -0.24
LIG1-218ENST00000599322 NCF4Q15080 339 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 CCSMST1Q4G0I0 132 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 TEDDM1Q5T9Z0 273 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 C1orf189Q5VU69 101 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 ADCK2Q7Z695 626 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 FAM20CQ8IXL6 584 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 ZBED8Q8IZ13 594 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 SLC38A9Q8NBW4 561 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 CD200R1Q8TD46 325 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 RERGQ96A58 199 aaPredicted RBP13.58□□□□□ -0.24
LIG1-218ENST00000599322 VPS50Q96JG6 964 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 CCDC138Q96M89 665 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 PKP4Q99569 1192 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 PCBD2Q9H0N5 130 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 ACSS2Q9NR19 701 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 ABCF3Q9NUQ8 709 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 TCFL5Q9UL49 500 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 KLHL20Q9Y2M5 609 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 VWA7Q9Y334 891 aa13.58□□□□□ -0.24
LIG1-218ENST00000599322 GFYI3L273 518 aa13.57□□□□□ -0.24
LIG1-218ENST00000599322 PEX12O00623 359 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms