RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PIAS2O75928 621 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RSL1D1O76021 490 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 SEC14L2O76054 403 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RASAL1O95294 804 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 OXSR1O95747 527 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 GPIP06744 558 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TFPTP0C1Z6 253 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ODC1P11926 461 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 FOSL1P15407 271 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TYMPP19971 482 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TCN2P20062 427 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 FUT4P22083 530 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MPSTP25325 297 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PSMA4P25789 261 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 MAP4P27816 1152 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 RBL1P28749 1068 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TYK2P29597 1187 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MAT2AP31153 395 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 NOS2P35228 1153 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SPRP35270 261 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 CAPGP40121 348 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CHRNA4P43681 627 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ASPAP45381 313 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 GSSP48637 474 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PCYT1AP49585 367 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MEOX1P50221 254 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RPL14P50914 215 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 IST1P53990 364 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PKNOX1P55347 436 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ARPC4P59998 168 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PSME3P61289 254 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SLC7A9P82251 487 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MS4A2Q01362 244 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MERTKQ12866 999 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SLC10A2Q12908 348 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 MTM1Q13496 603 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZNF234Q14588 700 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 STILQ15468 1287 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 NRF1Q16656 503 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZNF699Q32M78 642 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 LSM12Q3MHD2 195 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 ANKDD1AQ495B1 522 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZNF394Q53GI3 561 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 OXLD1Q5BKU9 147 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZNF542PQ5EBM4 170 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ARSJQ5FYB0 599 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 VWA5B1Q5TIE3 1220 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TMEM164Q5U3C3 297 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SLX4IPQ5VYV7 408 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ITPRIPL1Q6GPH6 555 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 NAPEPLDQ6IQ20 393 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 LCN8Q6JVE9 175 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 NANOGP8Q6NSW7 305 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 HMBOX1Q6NT76 420 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZCCHC8Q6NZY4 707 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 DENND1BQ6P3S1 775 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 NPNTQ6UXI9 565 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TMEM26Q6ZUK4 368 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 USP51Q70EK9 711 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CHSY3Q70JA7 882 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RD3Q7Z3Z2 195 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PIWIL4Q7Z3Z4 852 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 SPRED1Q7Z699 444 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 IGFN1Q86VF2 1251 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 FJX1Q86VR8 437 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ANKRD13BQ86YJ7 626 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CAMK1DQ8IU85 385 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 EPHX4Q8IUS5 362 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SCN4BQ8IWT1 228 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MYO1HQ8N1T3 1032 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MPP5Q8N3R9 675 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TTC39CQ8N584 583 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TAB3Q8N5C8 712 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 WDTC1Q8N5D0 677 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ANKRD52Q8NB46 1076 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CXorf38Q8TB03 319 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 C2orf15Q8WU43 125 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 CHAC2Q8WUX2 184 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 LRTOMTQ8WZ04 291 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZUFSPQ96AP4 578 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 KIAA1143Q96AT1 154 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 SLCO4A1Q96BD0 722 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 TMA16Q96EY4 203 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 TRMT2BQ96GJ1 504 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 SPATA13Q96N96 652 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 RDH12Q96NR8 316 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ALPK1Q96QP1 1244 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ZNF347Q96SE7 839 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ACO2Q99798 780 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 CTRCQ99895 268 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MYOCQ99972 504 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 HEPHQ9BQS7 1158 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 MSTO1Q9BUK6 570 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 SLC25A23Q9BV35 468 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 GATA5Q9BWX5 397 aaPredicted RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 NFKBIZQ9BYH8 718 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 CIPCQ9C0C6 399 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 PAIP1Q9H074 479 aaKnown RBP4.06□□□□□ -1.76
LIG3-211ENST00000588713 RAD21L1Q9H4I0 556 aa4.06□□□□□ -1.76
LIG3-211ENST00000588713 ALG2Q9H553 416 aa4.06□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms