RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 FIGLAQ6QHK4 219 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 AFTPHQ6ULP2 937 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 TTLL10Q6ZVT0 673 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 OVCH1Q7RTY7 1134 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 HDXQ7Z353 690 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 PEX26Q7Z412 305 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 TAX1BP1Q86VP1 789 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 MCATQ8IVS2 390 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 IQCKQ8N0W5 287 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 GPATCH11Q8N954 259 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 OR2L8Q8NGY9 312 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 OR4L1Q8NH43 312 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 PRR7Q8TB68 274 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 FKBP10Q96AY3 582 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 FER1L6-AS2Q96M78 137 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 IP6K3Q96PC2 410 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 PAIP2Q9BPZ3 127 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 C17orf62Q9BQA9 187 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 DESI2Q9BSY9 194 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 P2RY12Q9H244 342 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 LUC7LQ9NQ29 371 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 TREX1Q9NSU2 369 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 CTSFQ9UBX1 484 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 NDOR1Q9UHB4 597 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 FBXL4Q9UKA2 621 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 SRPK3Q9UPE1 567 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 RUVBL2Q9Y230 463 aaKnown RBP6.44□□□□□ -1.38
VPS53-213ENST00000572334 KLK4Q9Y5K2 254 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 NFS1Q9Y697 457 aa6.44□□□□□ -1.38
VPS53-213ENST00000572334 FBN2P35556 2912 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 PDZD2O15018 2839 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 LOC105369274A0A096LPK9 316 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 LOC102723532A0A0G2JNH3 316 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 A0A1B0GX78 115 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ERI2A8K979 691 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 RASGRF2O14827 1237 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 DSCR3O14972 297 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 POLR3GO15318 223 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 MAP3K7O43318 606 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 C1orf105O95561 183 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 S1PR4O95977 384 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ALBP02768 609 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ALAS2P22557 587 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 STIP1P31948 543 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 RPL22P35268 128 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 FDFT1P37268 417 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 DCTP40126 519 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CETN2P41208 172 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 BDKRB1P46663 353 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 OR1D4P47884 311 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CORO7P57737 925 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 SNRPNP63162 240 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 CRADDP78560 199 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 PLOD1Q02809 727 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 AIMP2Q13155 320 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 FASTKQ14296 549 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 ZKSCAN8Q15776 578 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 SYTL3Q4VX76 610 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CTSL3PQ5NE16 218 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 LYPLAL1Q5VWZ2 237 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 FRMPD2BQ6IN97 320 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ZNF449Q6P9G9 518 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 UNC5DQ6UXZ4 953 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 SHISA6Q6ZSJ9 500 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 MAMDC2Q7Z304 686 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 KIAA1328Q86T90 577 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 LINC00523Q86TU6 105 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 KCNMB4Q86W47 210 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 SLC13A5Q86YT5 568 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 DCUN1D3Q8IWE4 304 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 OR4N4Q8N0Y3 316 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ARHGEF39Q8N4T4 335 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 METTL27Q8N6F8 245 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 UBL4BQ8N7F7 174 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 DNAAF3Q8N9W5 541 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CLEC1AQ8NC01 280 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 OR11G2Q8NGC1 345 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 OR2A1Q8NGT9 310 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 OR6P1Q8NGX9 317 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CFAP61Q8NHU2 1237 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 C1orf54Q8WWF1 131 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ASZ1Q8WWH4 475 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 PSMF1Q92530 271 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 N4BP2L2Q92802 583 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 PEX13Q92968 403 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 C10orf90Q96M02 699 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 FAM210AQ96ND0 272 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 BIRC8Q96P09 236 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 NDC1Q9BTX1 674 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 SLC29A3Q9BZD2 475 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 WDR54Q9H977 334 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 ATP13A2Q9NQ11 1180 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CHRAC1Q9NRG0 131 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 CUTCQ9NTM9 273 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 TXLNGQ9NUQ3 528 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 STOX2Q9P2F5 926 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 GALPQ9UBC7 116 aa6.43□□□□□ -1.38
VPS53-213ENST00000572334 GPN3Q9UHW5 284 aaPredicted RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 NOVA2Q9UNW9 492 aaKnown RBP6.43□□□□□ -1.38
VPS53-213ENST00000572334 IGLV3-12A0A075B6K2 115 aa6.42□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms