RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	WFDC11	Q8NEX6	87 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	OR4K2	Q8NGD2	314 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	LILRB4	Q8NHJ6	448 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	RAPGEF5	Q92565	580 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	TEKT5	Q96M29	485 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	FRMD6	Q96NE9	622 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	SELENOS	Q9BQE4	189 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	IL1RAPL1	Q9NZN1	696 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	OR6C2	Q9NZP2	312 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	HACD3	Q9P035	362 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	CRLS1	Q9UJA2	301 aa		11.18	□□□□□ -0.62
CLK3-222	ENST00000568232	CPAMD8	Q8IZJ3	1885 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232		A0A1W2PQ72	361 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	HYKK	A2RU49	373 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	ASPDH	A6ND91	283 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	AGAP14	A8MT82	685 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	MYO1F	O00160	1098 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	MLYCD	O95822	493 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	CDKN1C	P49918	316 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	VSX2	P58304	361 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	RPA4	Q13156	261 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	TUBA3C	Q13748	450 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	KIR2DS3	Q14952	304 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	FAM214A	Q32MH5	1076 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	TCTE1	Q5JU00	501 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	RNFT1	Q5M7Z0	435 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	WASHC2D	Q5SRD0	308 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	SWT1	Q5T5J6	900 aa	Known RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	YOD1	Q5VVQ6	348 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	SPINK14	Q6IE38	97 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	TUBA3E	Q6PEY2	450 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	CLEC9A	Q6UXN8	241 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	NAPRT	Q6XQN6	538 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	PNPLA5	Q7Z6Z6	429 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	TAX1BP1	Q86VP1	789 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	CCDC71	Q8IV32	467 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	GHDC	Q8N2G8	530 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	CLDN19	Q8N6F1	224 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	LINC01555	Q8NAE3	123 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	LRRN4CL	Q8ND94	238 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	MDS2	Q8NDY4	140 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	IPMK	Q8NFU5	416 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	HDAC10	Q969S8	669 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	OXNAD1	Q96HP4	312 aa	Predicted RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF285	Q96NJ3	590 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	COPS8	Q99627	209 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	YIPF2	Q9BWQ6	316 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	POLDIP3	Q9BY77	421 aa	Known RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	KCNJ16	Q9NPI9	418 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	RIC8B	Q9NVN3	520 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	LIMA1	Q9UHB6	759 aa	Known RBP	11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	CIDEB	Q9UHD4	219 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	RNF6	Q9Y252	685 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	ABCA4	P78363	2273 aa		11.17	□□□□□ -0.62
CLK3-222	ENST00000568232	COL6A5	A8TX70	2615 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	FN1	P02751	2386 aa	Known RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	IGLV3-12	A0A075B6K2	115 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	FITM1	A5D6W6	292 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	CCL22	O00626	93 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	CTAG2	O75638	210 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	EPO	P01588	193 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	KDELR1	P24390	212 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	DNASE1	P24855	282 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ACADL	P28330	430 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	EEF1D	P29692	281 aa	Known RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ADSL	P30566	484 aa	Predicted RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	CD96	P40200	585 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	EFNA3	P52797	238 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	FASTK	Q14296	549 aa	Known RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	PDK1	Q15118	436 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	FRMPD2B	Q6IN97	320 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF449	Q6P9G9	518 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	FIGLA	Q6QHK4	219 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	GALNTL5	Q7Z4T8	443 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	TBC1D21	Q8IYX1	336 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	RPRML	Q8N4K4	120 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	OR13C4	Q8NGS5	318 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	NUDT8	Q8WV74	236 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	C18orf12	Q96KH6	178 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	IMMP1L	Q96LU5	166 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	PWWP2A	Q96N64	755 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	OLFM3	Q96PB7	478 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ALPK1	Q96QP1	1244 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ZNF700	Q9H0M5	742 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	CAMSAP3	Q9P1Y5	1249 aa	Predicted RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	LRFN1	Q9P244	771 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	ZC3H7B	Q9UGR2	993 aa	Known RBP	11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	POLG2	Q9UHN1	485 aa		11.16	□□□□□ -0.62
CLK3-222	ENST00000568232	HCFC1	P51610	2035 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	LOC105369274	A0A096LPK9	316 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	IGHV3-20	A0A0C4DH32	117 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	LOC102723532	A0A0G2JNH3	316 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	CFAP99	D6REC4	459 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	NRP2	O60462	931 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	MAN1A2	O60476	641 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	CTSV	O60911	334 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	AGT	P01019	485 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	HEXB	P07686	556 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	INHBB	P09529	407 aa		11.15	□□□□□ -0.62
CLK3-222	ENST00000568232	PRSS56	P0CW18	603 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms