RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 FRMPD2BQ6IN97 320 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 TTC23LQ6PF05 361 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 MED25Q71SY5 747 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 COX15Q7KZN9 410 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 RNF44Q7L0R7 432 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 CREG2Q8IUH2 290 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 IGDCC3Q8IVU1 814 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 LMNTD2Q8IXW0 634 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 LRRC56Q8IYG6 542 aaPredicted RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 TMEM102Q8N9M5 508 aaPredicted RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 OR2Y1Q8NGV0 311 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 GSDMBQ8TAX9 411 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 MAGEC3Q8TD91 643 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 GRK7Q8WTQ7 553 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 N4BP2L2Q92802 583 aaPredicted RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 PKP4Q99569 1192 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 MIPEPQ99797 713 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 C17orf62Q9BQA9 187 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 WDR83Q9BRX9 315 aaKnown RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 NUDT9Q9BW91 350 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 SLC7A5P2Q9GIP4 190 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 DDX47Q9H0S4 455 aaKnown RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.25□□□□□ -0.13
CLN3-213ENST00000565047 VPS9D1Q9Y2B5 631 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 DHRS7Q9Y394 339 aa14.25□□□□□ -0.13
CLN3-213ENST00000565047 COL12A1Q99715 3063 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 TNRC6AQ8NDV7 1962 aaKnown RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 LOC105369274A0A096LPK9 316 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 LOC102723532A0A0G2JNH3 316 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 CLEC18AA5D8T8 446 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 C9J4A7 227 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 DNALI1O14645 258 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 SRPX2O60687 465 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 ARSFP54793 590 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 MPP1Q00013 466 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 PTK6Q13882 451 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 ARHGAP19Q14CB8 494 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 CLEC18BQ6UXF7 455 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 TTLL10Q6ZVT0 673 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 OVCH1Q7RTY7 1134 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 PPP1R32Q7Z5V6 425 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 MRGPREQ86SM8 312 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 OR4N4Q8N0Y3 316 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 ARHGEF39Q8N4T4 335 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 DTWD1Q8N5C7 304 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 CLEC18CQ8NCF0 446 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 CD200R1Q8TD46 325 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 SKA2Q8WVK7 121 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 MIB2Q96AX9 1013 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 FOPNLQ96NB1 174 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 AARSD1Q9BTE6 412 aaKnown RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 NDC1Q9BTX1 674 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 SLC25A23Q9BV35 468 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 SLC26A1Q9H2B4 701 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 SLC6A20Q9NP91 592 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 ACSS2Q9NR19 701 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 C20orf96Q9NUD7 363 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 INTS7Q9NVH2 962 aaKnown RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 IFT80Q9P2H3 777 aaPredicted RBP14.24□□□□□ -0.13
CLN3-213ENST00000565047 FBXO5Q9UKT4 447 aa14.24□□□□□ -0.13
CLN3-213ENST00000565047 FLNCQ14315 2725 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 GOLGA6L10A0A0M3HER8 536 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 A0A1B0GX78 115 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 E7ENX8 843 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 DSCR3O14972 297 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 BANF1O75531 89 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 SLC16A8O95907 504 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 ALBP02768 609 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 CD63P08962 238 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 MPC1LP0DKB6 136 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TCP1P17987 556 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 SKIV2L2P42285 1042 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 SOX8P57073 446 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TAP2Q03519 686 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 DHX9Q08211 1270 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 CUL1Q13616 776 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 THOC5Q13769 683 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 CRYMQ14894 314 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 SLC9A5Q14940 896 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 PRTGQ2VWP7 1150 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 HSP90AA5PQ58FG0 334 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TCTE1Q5JU00 501 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 YOD1Q5VVQ6 348 aaPredicted RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 ZNF425Q6IV72 752 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 PAQR7Q86WK9 346 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 CNTN4Q8IWV2 1026 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TEX19Q8NA77 164 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 SERBP1Q8NC51 408 aaKnown RBP eCLIP14.23□□□□□ -0.13
CLN3-213ENST00000565047 C2CD4AQ8NCU7 369 aaPredicted RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 ZNF480Q8WV37 535 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 DLG3Q92796 817 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 FKBP10Q96AY3 582 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 PTERQ96BW5 349 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 SPSB2Q99619 263 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 SMAD5Q99717 465 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 EBNA1BP2Q99848 306 aaKnown RBP14.23□□□□□ -0.13
CLN3-213ENST00000565047 CUTCQ9NTM9 273 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TXLNGQ9NUQ3 528 aa14.23□□□□□ -0.13
CLN3-213ENST00000565047 TSR3Q9UJK0 312 aaKnown RBP14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms