RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 DNAJC22Q8N4W6 341 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 SERBP1Q8NC51 408 aaKnown RBP eCLIP13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 NOA1Q8NC60 698 aaKnown RBP13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 SEC14L1Q92503 715 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 SLC22A18Q96BI1 424 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 LRFN5Q96NI6 719 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 WDR83Q9BRX9 315 aaKnown RBP13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 ACAT2Q9BWD1 397 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 GPR87Q9BY21 358 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 TRIM55Q9BYV6 548 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 PLAC1Q9HBJ0 212 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 INTS10Q9NVR2 710 aaKnown RBP13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 GPN3Q9UHW5 284 aaPredicted RBP13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 PLCL2Q9UPR0 1127 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 TP53TG5Q9Y2B4 290 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 VPS9D1Q9Y2B5 631 aa13.11□□□□□ -0.31
VPS9D1-204ENST00000565023 ARHGEF33A8MVX0 844 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 K7EM74 188 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ZSCAN9O15535 394 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 NRP2O60462 931 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 RFPL1O75677 317 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 HAUS5O94927 633 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 HBQ1P09105 142 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ERVK-10P10266 1014 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ALAS2P22557 587 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 MCM3P25205 808 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 OTX2P32243 289 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CCNFP41002 786 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ADARP55265 1226 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 FOXL2P58012 376 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 SLC7A5Q01650 507 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CAV1Q03135 178 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 TRADDQ15628 312 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 UGT8Q16880 541 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CRTC2Q53ET0 693 aaPredicted RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 STEAP4Q687X5 459 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 FCRL6Q6DN72 434 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ZNF549Q6P9A3 640 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 SUSD1Q6UWL2 747 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 MCATQ8IVS2 390 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CEP112Q8N8E3 955 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 GIMAP7Q8NHV1 300 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 MAGEC3Q8TD91 643 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 DENND1AQ8TEH3 1009 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CFAP36Q96G28 342 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 NDNQ99608 321 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 GPR21Q99679 349 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 NDC1Q9BTX1 674 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 RAB11FIP5Q9BXF6 653 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 INTS7Q9NVH2 962 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 EURLQ9NYK6 297 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 SLC17A6Q9P2U8 582 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 ZC3H7BQ9UGR2 993 aaKnown RBP13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 TLK1Q9UKI8 766 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 FBXO5Q9UKT4 447 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 TCFL5Q9UL49 500 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 CHMP2BQ9UQN3 213 aa13.1□□□□□ -0.31
VPS9D1-204ENST00000565023 A0A0J9YVX5 310 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 MKRN2OSH3BPM6 223 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 EIF3HO15372 352 aaKnown RBP eCLIP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CATP04040 527 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CAPN1P07384 714 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 MSL3P1P0C860 447 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CARSP49589 748 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CCL11P51671 97 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CLCN7P51798 805 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 PLTPP55058 493 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 YBX1P67809 324 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 PDIA2Q13087 525 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 FRG1Q14331 258 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 GBX1Q14549 363 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 FASTKD3Q14CZ7 662 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 NCF4Q15080 339 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 TTLL9Q3SXZ7 439 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 GLE1Q53GS7 698 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 LACTB2Q53H82 288 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 EEF1AKMT2Q5JPI9 291 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 ZDHHC24Q6UX98 284 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 ZNF517Q6ZMY9 492 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 ATG14Q6ZNE5 492 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CPNE9Q8IYJ1 553 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 METTL27Q8N6F8 245 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 PPFIBP2Q8ND30 876 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 OR9A1PQ8NGU1 263 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 FBXO25Q8TCJ0 367 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 CALML6Q8TD86 181 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 FAM167BQ9BTA0 163 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 NLNQ9BYT8 704 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 PHACTR1Q9C0D0 580 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 PPANQ9NQ55 473 aaKnown RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 ACSS2Q9NR19 701 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 IFT80Q9P2H3 777 aaPredicted RBP13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 TUBD1Q9UJT1 453 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 AP1M2Q9Y6Q5 423 aa13.09□□□□□ -0.31
VPS9D1-204ENST00000565023 MDC1Q14676 2089 aaKnown RBP13.08□□□□□ -0.32
VPS9D1-204ENST00000565023 HEATR5BQ9P2D3 2071 aa13.08□□□□□ -0.32
VPS9D1-204ENST00000565023 PRICKLE3O43900 615 aaPredicted RBP13.08□□□□□ -0.32
VPS9D1-204ENST00000565023 MATN4O95460 622 aa13.08□□□□□ -0.32
VPS9D1-204ENST00000565023 EIF2S1P05198 315 aaKnown RBP13.08□□□□□ -0.32
VPS9D1-204ENST00000565023 RAB40ALP0C0E4 278 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms