RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 CXCR2P25025 360 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CSTF2P33240 577 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 EIF2DP41214 584 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 KCNC1P48547 511 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DGKQP52824 942 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MAPK12P53778 367 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 BTN3A2P78410 334 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ZP2Q05996 745 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TGM3Q08188 693 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PCLAFQ15004 111 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TRIM40Q6P9F5 258 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CHSY3Q70JA7 882 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ISCA2Q86U28 154 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OR5AK3PQ8NH89 298 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SMPDL3AQ92484 453 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 FAM162AQ96A26 154 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 KIAA1191Q96A73 305 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 RCN3Q96D15 328 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NSL1Q96IY1 281 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 GBP5Q96PP8 586 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 INSM2Q96T92 566 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PKP4Q99569 1192 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SLC39A3Q9BRY0 314 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SORBS1Q9BX66 1292 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ARNT2Q9HBZ2 717 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 C6orf203Q9P0P8 240 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TAAR2Q9P1P5 351 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ZNF212Q9UDV6 495 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SUSD2Q9UGT4 822 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 BCAP29Q9UHQ4 241 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 LGALS13Q9UHV8 139 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 HCN2Q9UL51 889 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NDUFAF1Q9Y375 327 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM221A6NGB7 291 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 E7EQ34 232 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 M0R296 226 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TLR4O00206 839 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TRAFD1O14545 582 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PRAMEF10O60809 474 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NT5EP21589 574 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CD9P21926 228 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 AFF3P51826 1226 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 HK3P52790 923 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 HERVK_113P63132 956 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 YBX1P67809 324 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DMWDQ09019 674 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 RALGDSQ12967 914 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MSLNQ13421 630 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NFATC4Q14934 902 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 LSM12Q3MHD2 195 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TMIGD1Q6UXZ0 262 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ADGRG6Q86SQ4 1221 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SLC9B2Q86UD5 537 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 UBALD2Q8IYN6 164 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SLC9A6Q92581 669 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PRR11Q96HE9 360 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TPD52L3Q96J77 140 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CCDC138Q96M89 665 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ASB2Q96Q27 587 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 RAB3IPQ96QF0 476 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PANX1Q96RD7 426 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 F2RL3Q96RI0 385 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TRIB3Q96RU7 358 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CDRT15Q96T59 188 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SERPINI1Q99574 410 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CTRCQ99895 268 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 GORASP1Q9BQQ3 440 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ERVK-6Q9BXR3 956 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SLC32A1Q9H598 525 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TFB2MQ9H5Q4 396 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ADAP2Q9NPF8 381 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 OXSMQ9NWU1 459 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 WNT16Q9UBV4 365 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TBC1D29Q9UFV1 150 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NEU3Q9UQ49 428 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 HCN4Q9Y3Q4 1203 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 AK5Q9Y6K8 562 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 LRRC37A2A6NM11 1700 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 RNF103-CHMP3A0A140T963 221 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 ANKRD33BA6NCL7 494 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 A8MUI8 341 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 NPC1O15118 1278 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 VEGFDO43915 354 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CHRNB1P11230 501 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 COL6A2P12110 1019 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 JUPP14923 745 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DRD4P21917 467 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 RYKP34925 604 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 CA5AP35218 305 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 FEN1P39748 380 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 KIR2DL1P43626 348 aaPredicted RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 PNLIPRP1P54315 467 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 DIO3P55073 304 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MANFP55145 182 aaKnown RBP5.28□□□□□ -1.56
VPS13C-209ENST00000560637 FOXA1P55317 472 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MAP7Q14244 749 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MAPRE2Q15555 327 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 MAPKAPK3Q16644 382 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 SPDYCQ5MJ68 293 aa5.28□□□□□ -1.56
VPS13C-209ENST00000560637 TMEM164Q5U3C3 297 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms