RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 SNX20Q7Z614 316 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SAPCD2Q86UD0 394 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SERINC5Q86VE9 423 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 LYSMD2Q8IV50 215 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF540Q8NDQ6 660 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SETD9Q8NE22 299 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TRPV1Q8NER1 839 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RHOXF1Q8NHV9 184 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TRIB2Q92519 343 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 DNASE1L2Q92874 299 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 FAM120BQ96EK7 910 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PDLIM5Q96HC4 596 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 APOL5Q9BWW9 433 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ACPTQ9BZG2 426 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CIPCQ9C0C6 399 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RNF167Q9H6Y7 350 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RMND5AQ9H871 391 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 LRTM1Q9HBL6 345 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 OPTCQ9UBM4 332 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 UBA2Q9UBT2 640 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 NDRG4Q9ULP0 352 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 EIF3LQ9Y262 564 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TPRKBQ9Y3C4 175 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ARIH1Q9Y4X5 557 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GMPPBQ9Y5P6 360 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 HSPE1-MOB4S4R3N1 261 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 A0A096LPI6 279 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 OR2A25A4D2G3 310 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PABPN1LA6NDY0 278 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 UPK3BL1B0FP48 263 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 MYO1GB0I1T2 1018 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 UPK3BL2E5RIL1 263 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 F5H5T6 163 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 M0R082 166 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CBX4O00257 560 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 MANBAO00462 879 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TBX1O43435 398 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RGS14O43566 566 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 LRATO95237 230 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF682O95780 498 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GLUD1P00367 558 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 EIF2S1P05198 315 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CD36P16671 472 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CTPS1P17812 591 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 C21orf33P30042 268 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PTGER3P43115 390 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GSSP48637 474 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SEPHS1P49903 392 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 NEK2P51955 445 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PPP5CP53041 499 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 FAM189BP81408 668 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ARF5P84085 180 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 IFITM2Q01629 132 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 MAD2L1Q13257 205 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GNASQ5JWF2 1037 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 STEAP3Q658P3 488 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TRIM46Q7Z4K8 759 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ADAMTSL2Q86TH1 951 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RTN4RL1Q86UN2 441 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ARMC8Q8IUR7 673 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CRIPAKQ8N1N5 446 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 RNF175Q8N4F7 328 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CARNMT1Q8N4J0 409 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TTC29Q8NA56 475 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TBC1D20Q96BZ9 403 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 TSSK3Q96PN8 268 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CLSTN3Q9BQT9 956 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ASPSCR1Q9BZE9 553 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 GABARAPL1Q9H0R8 117 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 MAGEH1Q9H213 219 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SPC25Q9HBM1 224 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ITM2CQ9NQX7 267 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 THG1LQ9NWX6 298 aaKnown RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 SCN3BQ9NY72 215 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 PDP1Q9P0J1 537 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 IL17CQ9P0M4 197 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 ZNF229Q9UJW7 825 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 CAB39Q9Y376 341 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-212ENST00000552491 COMMD10Q9Y6G5 202 aa5.28□□□□□ -1.56
LIMA1-212ENST00000552491 KRT87PA6NCN2 255 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 METTL15A6NJ78 407 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 A6NL46 340 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 EFCAB9A8MZ26 197 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 E9PQ18 207 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 H7C0S8 307 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 DSCR3O14972 297 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RAD51BO15315 384 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RGS10O43665 173 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 KDELR3O43731 214 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SSX4O60224 188 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 MRPS14O60783 128 aaKnown RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 FAM20BO75063 409 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 ULK1O75385 1050 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 UPK1BO75841 260 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 RECQL5O94762 991 aaPredicted RBP5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PGLSO95336 258 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 GJB5O95377 273 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 PDYNP01213 254 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 KLKB1P03952 638 aa5.27□□□□□ -1.57
LIMA1-212ENST00000552491 SEMG1P04279 462 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms