RNA–Protein interactions for RNA: ENST00000545686.6

TDP1-204, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best)

Gene TDP1, Length 2,488 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-204ENST00000545686 AKAP14Q86UN6 197 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 SNX29P2Q8IUI4 249 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 C10orf111Q8N326 155 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 BEND7Q8N7W2 519 aaPredicted RBP8.53□□□□□ -1.04
TDP1-204ENST00000545686 NELL1Q92832 810 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 SMIM14Q96QK8 99 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 SPATA9Q9BWV2 254 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 GABARAPL3Q9BY60 117 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 CEP44Q9C0F1 390 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 FARSBQ9NSD9 589 aaKnown RBP8.53□□□□□ -1.04
TDP1-204ENST00000545686 SACM1LQ9NTJ5 587 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 CCDC59Q9P031 241 aaKnown RBP8.53□□□□□ -1.04
TDP1-204ENST00000545686 ATP11BQ9Y2G3 1177 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 TESMINQ9Y4I5 508 aa8.53□□□□□ -1.04
TDP1-204ENST00000545686 NUP214P35658 2090 aaPredicted RBP8.52□□□□□ -1.04
TDP1-204ENST00000545686 A0A1B0GVM2 712 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 B4GALT3O60512 393 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 WBP4O75554 376 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 OXSR1O95747 527 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 ZNF682O95780 498 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 GUCA1CO95843 209 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 MYCLP1P12525 358 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 PXNP49023 591 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 CLK1P49759 484 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 KCNQ1P51787 676 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 TPTEP56180 551 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 TEKQ02763 1124 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PRKCDQ05655 676 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ELP6Q0PNE2 266 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 BOP1Q14137 746 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 MAPK11Q15759 364 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CTXN3Q4LDR2 81 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 GNASQ5JWF2 1037 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PNCKQ6P2M8 343 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CCDC80Q76M96 950 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 SERPINA9Q86WD7 417 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ZBTB2Q8N680 514 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 TTC9BQ8N6N2 239 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ATAD1Q8NBU5 361 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PSMA8Q8TAA3 256 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CMTM7Q96FZ5 175 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 YME1L1Q96TA2 773 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 EPYCQ99645 322 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 BARD1Q99728 777 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 INPP5KQ9BT40 448 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ACPTQ9BZG2 426 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CWH43Q9H720 699 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CCSER2Q9H7U1 834 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 AASDHPPTQ9NRN7 309 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PLCXD1Q9NUJ7 323 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PDP1Q9P0J1 537 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 KLHL3Q9UH77 587 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CPA4Q9UI42 421 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 DNMT3LQ9UJW3 386 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ANAPC1Q9H1A4 1944 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 SERTM1A2A2V5 107 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PABPN1LA6NDY0 278 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 MYO1GB0I1T2 1018 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 LOC730098B7Z3J9 87 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 RFXANKO14593 260 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 AIREO43918 545 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 FZD6O60353 706 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 STK16O75716 305 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 EOMESO95936 686 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 C9P02748 559 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CBSLP0DN79 551 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CBSP35520 551 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 SMARCB1Q12824 385 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 NPRL3Q12980 569 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 MTAPQ13126 283 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ZNF177Q13360 481 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 MRPL58Q14197 206 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 VMACQ2NL98 169 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 FBXO43Q4G163 708 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 GPRC6AQ5T6X5 926 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ATAD3BQ5T9A4 648 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 DOK6Q6PKX4 331 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CXCL17Q6UXB2 119 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 ZNF783Q6ZMS7 281 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 MACC1Q6ZN28 852 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 EIF3MQ7L2H7 374 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 GPR155Q7Z3F1 870 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 AMER2Q8N7J2 671 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 KBTBD8Q8NFY9 601 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 CLHC1Q8NHS4 586 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 GPR152Q8TDT2 470 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 HRASLS5Q96KN8 279 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PTPN18Q99952 460 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 APOL5Q9BWW9 433 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 GPR63Q9BZJ6 419 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 REEP1Q9H902 201 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 PCDH12Q9NPG4 1184 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 RGS17Q9UGC6 210 aaPredicted RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 SNX6Q9UNH7 406 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 DLGAP4Q9Y2H0 992 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 FNDC3AQ9Y2H6 1198 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 IFT52Q9Y366 437 aa8.52□□□□□ -1.05
TDP1-204ENST00000545686 SAMHD1Q9Y3Z3 626 aaKnown RBP8.52□□□□□ -1.05
TDP1-204ENST00000545686 KIAA1671Q9BY89 1806 aa8.52□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms