RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 DHRS4L2Q6PKH6 230 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 MAMDC4Q6UXC1 1216 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 FGD2Q7Z6J4 655 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 NRARPQ7Z6K4 114 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CYP4Z1Q86W10 505 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CACUL1Q86Y37 369 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 C10orf53Q8N6V4 93 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 GPR152Q8TDT2 470 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 AKAP1Q92667 903 aaKnown RBP eCLIP13.91□□□□□ -0.18
LIMS1-215ENST00000544547 C12orf42Q96LP6 360 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 CAMKK2Q96RR4 588 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 WACQ9BTA9 647 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 OSBPL2Q9H1P3 480 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 PCDHB14Q9Y5E9 798 aa13.91□□□□□ -0.18
LIMS1-215ENST00000544547 SOBPA7XYQ1 873 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 EIF3FO00303 357 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 KPNA3O00505 521 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 FHP07954 510 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 ANXA5P08758 320 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CTPS1P17812 591 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CENPAP49450 140 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CDKN2DP55273 166 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 DCDC1P59894 354 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 SLC10A7Q0GE19 358 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 MAB21L1Q13394 359 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CCDC58Q4VC31 144 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 INTS6LQ5JSJ4 861 aaKnown RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 RFPL4BQ6ZWI9 263 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CILP2Q8IUL8 1156 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CFAP52Q8N1V2 620 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TMEM86AQ8N2M4 240 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 NPWQ8N729 165 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TBC1D17Q9HA65 648 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 A0A096LPI6 279 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 FSHRP23945 695 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 C21orf33P30042 268 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 GABARAPL2P60520 117 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 FAM189BP81408 668 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TAZQ16635 292 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 AKIRIN2Q53H80 203 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 MZT2AQ6P582 158 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CIR1Q86X95 450 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 PARP16Q8N5Y8 322 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 GSTO2Q9H4Y5 243 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TFB2MQ9H5Q4 396 aaKnown RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 ANKRA2Q9H9E1 313 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 BEX1Q9HBH7 125 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 N6AMT1Q9Y5N5 214 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TLL1O43897 1013 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 NAT1P18440 290 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 ENDOUP21128 410 aaKnown RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CA5AP35218 305 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 GRSF1Q12849 480 aaKnown RBP eCLIP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 SEMA3AQ14563 771 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 GTDC1Q4AE62 458 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 PNCKQ6P2M8 343 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 CHMP1BQ7LBR1 199 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 TICAM1Q8IUC6 712 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 DTX3Q8N9I9 347 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 OR10G2Q8NGC3 310 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 PCED1BQ96HM7 432 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 RANGRFQ9HD47 186 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 ABCC13Q9NSE7 274 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 MARCH4Q9P2E8 410 aaPredicted RBP13.9□□□□□ -0.18
LIMS1-215ENST00000544547 NRCAMQ92823 1304 aa13.9□□□□□ -0.18
LIMS1-215ENST00000544547 FGF1P05230 155 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 PRKACAP17612 351 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 FPR1P21462 350 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 SDC2P34741 201 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 RPS14P62263 151 aaKnown RBP13.9□□□□□ -0.19
LIMS1-215ENST00000544547 INCA1Q0VD86 236 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 AQP6Q13520 282 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 DEF8Q6ZN54 512 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 NOXA1Q86UR1 476 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 FUNDC1Q8IVP5 155 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 ZNF431Q8TF32 576 aaPredicted RBP13.9□□□□□ -0.19
LIMS1-215ENST00000544547 SOCS4Q8WXH5 440 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 CLIP3Q96DZ5 547 aa13.9□□□□□ -0.19
LIMS1-215ENST00000544547 ALPLP05186 524 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 LPOP22079 712 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 CD68P34810 354 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 TRIM71Q2Q1W2 868 aaKnown RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 SPRED1Q7Z699 444 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ISCA2Q86U28 154 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 VANGL1Q8TAA9 524 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 PCNPQ8WW12 178 aaKnown RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 COL21A1Q96P44 957 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 ZYG11BQ9C0D3 744 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 TTYH1Q9H313 450 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 RRAGCQ9HB90 399 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 SDR39U1Q9NRG7 319 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 AIG1Q9NVV5 245 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 CD300AQ9UGN4 299 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 SPIN1Q9Y657 262 aaPredicted RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 GSAPA4D1B5 854 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 FADS2P1A8MWK0 482 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 CHURC1-FNTBB4DL54 471 aa13.89□□□□□ -0.19
LIMS1-215ENST00000544547 NUPL2O15504 423 aaKnown RBP13.89□□□□□ -0.19
LIMS1-215ENST00000544547 OR7A10O76100 309 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms