RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 BSPRYQ5W0U4 402 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 PWWP2BQ6NUJ5 590 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 FAM47EQ6ZV65 393 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ARHGAP22Q7Z5H3 698 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 KRT77Q7Z794 578 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 TLK2Q86UE8 772 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 GTSCR1Q86UQ5 136 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 KLHL7Q8IXQ5 586 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 CCAR2Q8N163 923 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 NDUFAF2Q8N183 169 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 MARVELD2Q8N4S9 558 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ZNF614Q8N883 585 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 PI4KAP1Q8N8J0 262 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 BMPERQ8N8U9 685 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 XXYLT1Q8NBI6 393 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 NOA1Q8NC60 698 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 SLC26A7Q8TE54 656 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 SPSB1Q96BD6 273 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ZNF689Q96CS4 500 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 AGAP3Q96P47 875 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 C16orf70Q9BSU1 422 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 VN1R1Q9GZP7 353 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 SNX25Q9H3E2 840 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 FN3KQ9H479 309 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 MBNL1Q9NR56 388 aaKnown RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 WDR35Q9P2L0 1181 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 CACNG5Q9UF02 275 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 C19orf25Q9UFG5 118 aaPredicted RBP2.49□□□□□ -2.01
CD44-238ENST00000534296 GIMAP2Q9UG22 337 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 SNX7Q9UNH6 387 aa2.49□□□□□ -2.01
CD44-238ENST00000534296 ZNF541Q9H0D2 1346 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 LOC101059948A0A1B0GTJ6 334 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ANXA2P2A6NMY6 339 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 E9PI62 339 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 EXTL3O43909 919 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ZNF821O75541 412 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 CREG1O75629 220 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 RECQL5O94762 991 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 CELF2O95319 508 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 SLU7O95391 586 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 NADKO95544 446 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 NGFP01138 241 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PRKAR1AP10644 381 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PDGFRAP16234 1089 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 CEBPBP17676 345 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PTAFRP25105 342 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PSMA3P25788 255 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 CTNNA1P35221 906 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 HSD17B3P37058 310 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 GP5P40197 560 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 CETN2P41208 172 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 MAPK12P53778 367 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 IRX6P78412 446 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 KLC1Q07866 573 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 MZT1Q08AG7 82 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PHKG1Q16816 387 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 VWC2Q2TAL6 325 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 CCDC184Q52MB2 194 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 DCAF10Q5QP82 559 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 SPOUT1Q5T280 376 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 ADAMTSL4-AS1Q5T5F5 129 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PSRC1Q6PGN9 363 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 RBPMS2Q6ZRY4 209 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 GALNTL5Q7Z4T8 443 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ADIPOR2Q86V24 386 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 AMIGO1Q86WK6 493 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 NUDT13Q86X67 352 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 MAML2Q8IZL2 1156 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 ARHGAP24Q8N264 748 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 TMCO5AQ8N6Q1 288 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 OR13C3Q8NGS6 347 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 FGFBP3Q8TAT2 258 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 GRK7Q8WTQ7 553 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 DEPDC1BQ8WUY9 529 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 DYRK2Q92630 601 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ARSGQ96EG1 525 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 POM121L2Q96KW2 1035 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 CCDC114Q96M63 670 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 FNBP1Q96RU3 617 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 OLFM1Q99784 485 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 MGME1Q9BQP7 344 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ADPGKQ9BRR6 497 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 BTBD10Q9BSF8 475 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 THUMPD3Q9BV44 507 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 MTMR12Q9C0I1 747 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PPIL3Q9H2H8 161 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 CHST11Q9NPF2 352 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ZNF71Q9NQZ8 489 aaPredicted RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 SH3GLB2Q9NR46 395 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 FGF21Q9NSA1 209 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 PLCXD1Q9NUJ7 323 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 OSER1Q9NX31 292 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 MTUS1Q9ULD2 1270 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 GRID1Q9ULK0 1009 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ABT1Q9ULW3 272 aaKnown RBP2.48□□□□□ -2.01
CD44-238ENST00000534296 POMT1Q9Y6A1 747 aa2.48□□□□□ -2.01
CD44-238ENST00000534296 ASTN2O75129 1339 aaPredicted RBP2.47□□□□□ -2.01
CD44-238ENST00000534296 TRAV34A0A0B4J273 112 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 A0A1W2PPW3 197 aa2.47□□□□□ -2.01
CD44-238ENST00000534296 NEMP2A6NFY4 417 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms