RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 TARM1B6A8C7 271 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 TMEM150CB9EJG8 249 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 H3BMH7 237 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 CYP2A7P20853 494 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 IMPA1P29218 277 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 YBX1P67809 324 aaKnown RBP19.11■□□□□ 0.65
CPSF1-209ENST00000532725 USP10Q14694 798 aaKnown RBP19.11■□□□□ 0.65
CPSF1-209ENST00000532725 EFTUD2Q15029 972 aaKnown RBP eCLIP19.11■□□□□ 0.654e-13■■■■■ 32.1
CPSF1-209ENST00000532725 PRAMEF17Q5VTA0 474 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 C6orf15Q6UXA7 325 aaPredicted RBP19.11■□□□□ 0.65
CPSF1-209ENST00000532725 GALNT6Q8NCL4 622 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 PPFIBP2Q8ND30 876 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 MIPEPQ99797 713 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 PRORYQ9H606 182 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 FANCEQ9HB96 536 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 PCM1Q15154 2024 aa19.11■□□□□ 0.65
CPSF1-209ENST00000532725 SEC16AO15027 2179 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 KRT37O76014 449 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 NTRK1P04629 796 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 PHBP35232 272 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 ATP1A2P50993 1020 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 UCNP55089 124 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 MANEAQ5SRI9 462 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 VASH2Q86V25 355 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 SYTL1Q8IYJ3 562 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 ESX1Q8N693 406 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 IL22RA1Q8N6P7 574 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 SLC38A9Q8NBW4 561 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 CYTH2Q99418 400 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 ACSS3Q9H6R3 686 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 CPNE5Q9HCH3 593 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 GPAMQ9HCL2 828 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 INTS7Q9NVH2 962 aaKnown RBP19.1■□□□□ 0.65
CPSF1-209ENST00000532725 STOX2Q9P2F5 926 aaPredicted RBP19.1■□□□□ 0.65
CPSF1-209ENST00000532725 ITPR1Q14643 2758 aa19.1■□□□□ 0.65
CPSF1-209ENST00000532725 LOC101059948A0A1B0GTJ6 334 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SCRG1O75711 98 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 HIST1H2AGP0C0S8 130 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 HIST1H2ADP20671 130 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 RPA3P35244 121 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SLC12A2P55011 1212 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 PRDX1Q06830 199 aaKnown RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 ABHD18Q0P651 414 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SLMAPQ14BN4 828 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 ZKSCAN8Q15776 578 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 ZXDCQ2QGD7 858 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SBSNQ6UWP8 590 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 MBOAT1Q6ZNC8 495 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 TMEM126BQ8IUX1 230 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 MCATQ8IVS2 390 aaKnown RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SNRNP27Q8WVK2 155 aaKnown RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 TSPAN17Q96FV3 270 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 HIST1H2AHQ96KK5 128 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 HIST1H2AJQ99878 128 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 H2AFJQ9BTM1 129 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 ACAT2Q9BWD1 397 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 SPRTNQ9H040 489 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 AKIRIN1Q9H9L7 192 aaPredicted RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 WDR70Q9NW82 654 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 NOVA2Q9UNW9 492 aaKnown RBP19.09■□□□□ 0.65
CPSF1-209ENST00000532725 PLCL2Q9UPR0 1127 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 PCDHB3Q9Y5E6 796 aa19.09■□□□□ 0.65
CPSF1-209ENST00000532725 HMX2A2RU54 273 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 ESPNB1AK53 854 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 K7ENP7 123 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 CDC7O00311 574 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 PHGDHO43175 533 aaKnown RBP19.08■□□□□ 0.64
CPSF1-209ENST00000532725 ACSL3O95573 720 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 MT-ND3P03897 115 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 CTSBP07858 339 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 ENO2P09104 434 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-209ENST00000532725 STMN1P16949 149 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 WT1P19544 449 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-209ENST00000532725 CMPK1P30085 196 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 ITGA1P56199 1179 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 TMPRSS3P57727 454 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 DEFB110Q30KQ9 67 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 FBXO42Q6P3S6 717 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 INO80CQ6PI98 192 aaPredicted RBP19.08■□□□□ 0.64
CPSF1-209ENST00000532725 AGTRAPQ6RW13 159 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 CCDC81Q6ZN84 652 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 DPH7Q9BTV6 452 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 TRIM54Q9BYV2 358 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 EURLQ9NYK6 297 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 TAC3Q9UHF0 121 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 PADI1Q9ULC6 663 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 ANKRD12Q6UB98 2062 aa19.08■□□□□ 0.64
CPSF1-209ENST00000532725 IGKV1-8A0A0C4DH67 115 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 CTSVO60911 334 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 FAM153BP0C7A2 387 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 CCNYL3P0C7X3 344 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 LIFP15018 202 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 STAT5AP42229 794 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 AP1S2P56377 157 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 RAB10P61026 200 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 CXADRP78310 365 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 VAC14Q08AM6 782 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 TSTA3Q13630 321 aaPredicted RBP19.07■□□□□ 0.64
CPSF1-209ENST00000532725 PPP1R3AQ16821 1122 aa19.07■□□□□ 0.64
CPSF1-209ENST00000532725 FAM153CQ494X1 144 aa19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms