RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 ANAPC5Q9UJX4 755 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 NOVA2Q9UNW9 492 aaKnown RBP10.87□□□□□ -0.67
VPS28-214ENST00000531032 CSAG2Q9Y5P2 127 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 MRFAP1Q9Y605 127 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 ITPR2Q14571 2701 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 POLEQ07864 2286 aa10.87□□□□□ -0.67
VPS28-214ENST00000531032 MYO9AB2RTY4 2548 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 VSTM2BA6NLU5 285 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 KPNA5O15131 536 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 CD3EAPO15446 510 aaKnown RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 SRPX2O60687 465 aaPredicted RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 C1orf105O95561 183 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 PSMB5P28074 263 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 BDKRB1P46663 353 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 GLRBP48167 497 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 ELOAQ14241 798 aaKnown RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 HIF1AQ16665 826 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 FAM214AQ32MH5 1076 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 CCSMST1Q4G0I0 132 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 AGAP7PQ5VUJ5 663 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 PTRHD1Q6GMV3 140 aaKnown RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 TTC23LQ6PF05 361 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 OTOAQ7RTW8 1153 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 LRRC6Q86X45 466 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 CCDC89Q8N998 374 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 TTC29Q8NA56 475 aaPredicted RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 ST6GALNAC3Q8NDV1 305 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 OR2L3Q8NG85 312 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 RAD51AP1Q96B01 352 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 C5orf34Q96MH7 638 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 AGAP4Q96P64 663 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 SOX17Q9H6I2 414 aaPredicted RBP10.86□□□□□ -0.67
VPS28-214ENST00000531032 NFS1Q9Y697 457 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 CENPEQ02224 2701 aa10.86□□□□□ -0.67
VPS28-214ENST00000531032 A0A1W2PPV9 198 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 KRT87PA6NCN2 255 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 E2F3O00716 465 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 NRP2O60462 931 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 MED26O95402 600 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 ZSCAN5DPP0CG00 497 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 ARNTP27540 789 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 RPL22P35268 128 aaKnown RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 CCNFP41002 786 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 TSFMP43897 325 aaKnown RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 OR1D4P47884 311 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 SESN2P58004 480 aaPredicted RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 VSX2P58304 361 aaPredicted RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 CRADDP78560 199 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 SNX1Q13596 522 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 SIX1Q15475 284 aaPredicted RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 RBBP7Q16576 425 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 TUBB8Q3ZCM7 444 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 CTSL3PQ5NE16 218 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 WASHC2DQ5SRD0 308 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 IRAK1BP1Q5VVH5 260 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 FRMPD2BQ6IN97 320 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 PRMT9Q6P2P2 845 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 DRICH1Q6PGQ1 229 aaPredicted RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 SHISA6Q6ZSJ9 500 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 RNF44Q7L0R7 432 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 RAB42Q8N4Z0 105 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 DTWD1Q8N5C7 304 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 OR11G2Q8NGC1 345 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 OR2A1Q8NGT9 310 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 GSDMBQ8TAX9 411 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 VPS50Q96JG6 964 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 MIPEPQ99797 713 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 IL22Q9GZX6 179 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 LHPPQ9H008 270 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 AGPAT4Q9NRZ5 378 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 SPATA7Q9P0W8 599 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 TTC7AQ9ULT0 858 aaPredicted RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 GUCA1BQ9UMX6 200 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 RUVBL2Q9Y230 463 aaKnown RBP10.85□□□□□ -0.67
VPS28-214ENST00000531032 MAU2Q9Y6X3 613 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 FAM169AQ9Y6X4 670 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 CELSR2Q9HCU4 2923 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 CRYBG3Q68DQ2 2970 aa10.85□□□□□ -0.67
VPS28-214ENST00000531032 IGLV3-12A0A075B6K2 115 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 LOC105369274A0A096LPK9 316 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 LOC102723532A0A0G2JNH3 316 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 HYKKA2RU49 373 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 OR2A25A4D2G3 310 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 AP3B1O00203 1094 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 NDUFS3O75489 264 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 MATN4O95460 622 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 ERGP11308 486 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 COL8A1P27658 744 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 NMBRP28336 390 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 ATP5DP30049 168 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 DCTP40126 519 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 CARSP49589 748 aaKnown RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 EIF3BP55884 814 aaKnown RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 KLC1Q07866 573 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 Q0VFX4 171 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 GBX1Q14549 363 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 ZNF169Q14929 603 aaPredicted RBP10.84□□□□□ -0.67
VPS28-214ENST00000531032 NAA25Q14CX7 972 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 CCNG2Q16589 344 aa10.84□□□□□ -0.67
VPS28-214ENST00000531032 B3GNTL1Q67FW5 361 aaPredicted RBP10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms