RNA–Protein interactions for RNA: ENST00000528142.5

VPS28-209, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 1,821 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-209ENST00000528142 HORMAD1Q86X24 394 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 DNASE1L2Q92874 299 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 ITM2CQ9NQX7 267 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 PHPT1Q9NRX4 125 aaPredicted RBP20.06■□□□□ 0.8
VPS28-209ENST00000528142 SLAMF8Q9P0V8 285 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 GMPR2Q9P2T1 348 aaKnown RBP20.06■□□□□ 0.8
VPS28-209ENST00000528142 LIMD1Q9UGP4 676 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 KCNE2Q9Y6J6 123 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 PRR23AA6NEV1 266 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 KMOO15229 486 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 NPPBP16860 134 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 DGKQP52824 942 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 TBPL1P62380 186 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 TAP2Q03519 686 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 SLC2A7Q6PXP3 512 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 SLCO4C1Q6ZQN7 724 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 SYTL1Q8IYJ3 562 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 GLB1L3Q8NCI6 653 aaPredicted RBP20.06■□□□□ 0.8
VPS28-209ENST00000528142 NEIL2Q969S2 332 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 TMEM125Q96AQ2 219 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 APIPQ96GX9 242 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 PREBQ9HCU5 417 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 DLGAP4Q9Y2H0 992 aa20.06■□□□□ 0.8
VPS28-209ENST00000528142 SHISA7A6NL88 538 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 NVLO15381 856 aaKnown RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 MYCLP1P12525 358 aaPredicted RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 HSD17B1P14061 328 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 ACPPP15309 386 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 ATXN3P54252 364 aaPredicted RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 CSTF3Q12996 717 aaKnown RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 SKIV2LQ15477 1246 aaKnown RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 SPATS1Q496A3 300 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 ZFP1Q6P2D0 407 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 DLEU7Q6UYE1 221 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 KIAA2013Q8IYS2 634 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 RNF175Q8N4F7 328 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 SIPA1Q96FS4 1042 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 ZBTB18Q99592 522 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 DPY30Q9C005 99 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 CLMPQ9H6B4 373 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 SPATA6Q9NWH7 488 aaPredicted RBP20.05■□□□□ 0.8
VPS28-209ENST00000528142 FZD4Q9ULV1 537 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 ASF1AQ9Y294 204 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 TMED5Q9Y3A6 229 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 TRPM6Q9BX84 2022 aa20.05■□□□□ 0.8
VPS28-209ENST00000528142 KLHL33A6NCF5 533 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 PRPS2P11908 318 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 AMD1P17707 334 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 IGFALSP35858 605 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 PNLIPRP1P54315 467 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 MRPS22P82650 360 aaKnown RBP20.04■□□□□ 0.8
VPS28-209ENST00000528142 USP30Q70CQ3 517 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 LMNTD1Q8N9Z9 388 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 PHC3Q8NDX5 983 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 OR5AR1Q8NGP9 310 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TFGQ92734 400 aaPredicted RBP20.04■□□□□ 0.8
VPS28-209ENST00000528142 WDR34Q96EX3 536 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 FCRL1Q96LA6 429 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 UHRF1Q96T88 793 aaPredicted RBP20.04■□□□□ 0.8
VPS28-209ENST00000528142 PSMD13Q9UNM6 376 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3DA0A087WVF3 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3IA0A087WXS9 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3EA0A087X179 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3KA0A087X1G2 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3FA6NER0 549 aaPredicted RBP20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3LB9A6J9 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3HP0C7X1 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 CLDN8P56748 225 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 DMPKQ09013 629 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3GQ6DHY5 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3CQ6IPX1 549 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 TBC1D3Q8IZP1 549 aaPredicted RBP20.04■□□□□ 0.8
VPS28-209ENST00000528142 DEFB123Q8N688 67 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 KRTCAP2Q8N6L1 136 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 DNAJB14Q8TBM8 379 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 RAD51AP1Q96B01 352 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 MRGPRX1Q96LB2 322 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 C1QTNF7Q9BXJ2 289 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 SLC17A4Q9Y2C5 497 aa20.04■□□□□ 0.8
VPS28-209ENST00000528142 DNAJA2O60884 412 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 CEACAM5P06731 702 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 C8BP07358 591 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 FOSL2P15408 326 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 PCSK2P16519 638 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 KELP23276 732 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 RABL3Q5HYI8 236 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 ICE2Q659A1 982 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 NANOGP8Q6NSW7 305 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 PRR23BQ6ZRT6 265 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 DCUN1D3Q8IWE4 304 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 ASB12Q8WXK4 309 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 TRIM8Q9BZR9 551 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 NANOGQ9H9S0 305 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 SGK2Q9HBY8 427 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 SH2B3Q9UQQ2 575 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 PCDHGA11Q9Y5H2 935 aa20.03■□□□□ 0.8
VPS28-209ENST00000528142 IL6P05231 212 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 HSD3B1P14060 373 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 SDC1P18827 310 aa20.02■□□□□ 0.8
VPS28-209ENST00000528142 TACR1P25103 407 aa20.02■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms