RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 TAF1BQ53T94 588 aaPredicted RBP13.75□□□□□ -0.21
NUP54-216ENST00000514901 CDKL4Q5MAI5 379 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 ADGRD1Q6QNK2 874 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 SBSNQ6UWP8 590 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 TAX1BP1Q86VP1 789 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 PPP1R3BQ86XI6 285 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 OR2L3Q8NG85 312 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 OR2A1Q8NGT9 310 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 DCAKDQ8WVC6 231 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 UBLCP1Q8WVY7 318 aaPredicted RBP13.75□□□□□ -0.21
NUP54-216ENST00000514901 FBXL8Q96CD0 374 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 DHRS4Q9BTZ2 278 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 EPB41L4BQ9H329 900 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 SNX15Q9NRS6 342 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 OARD1Q9Y530 152 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 B3GALT1Q9Y5Z6 326 aa13.75□□□□□ -0.21
NUP54-216ENST00000514901 DMXL2Q8TDJ6 3036 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 KRT87PA6NCN2 255 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 NPEPPSL1A6NEC2 478 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CDC7O00311 574 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 SNRNP200O75643 2136 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 C2P06681 752 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 ANXA5P08758 320 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 LTA4HP09960 611 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 EBLN1P0CF75 366 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 SPTBP11277 2137 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 PVRP15151 417 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CD1DP15813 335 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 HRH2P25021 359 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 HNMTP50135 292 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CSRP3P50461 194 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 PRDX1Q06830 199 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 TSTA3Q13630 321 aaPredicted RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 BMPR2Q13873 1038 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 KCNAB1Q14722 419 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 TSNQ15631 228 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 PPP1R3AQ16821 1122 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 FAM83EQ2M2I3 478 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 ZC3H12BQ5HYM0 836 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 FIGLAQ6QHK4 219 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 AGTRAPQ6RW13 159 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 SUSD1Q6UWL2 747 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 FRA10AC1Q70Z53 315 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CMC1Q7Z7K0 106 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 TRIM73Q86UV7 250 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 PROSER1Q86XN7 944 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 LRRC56Q8IYG6 542 aaPredicted RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 ZNF248Q8NDW4 579 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 STAG3L4Q8TBR4 150 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 ISL2Q96A47 359 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 KIAA1191Q96A73 305 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CNTNAP3BQ96NU0 1288 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 PARD6BQ9BYG5 372 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 CNTNAP3Q9BZ76 1288 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 MRPS30Q9NP92 439 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 CCDC177Q9NQR7 707 aaPredicted RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 FGF21Q9NSA1 209 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 ANKMY1Q9P2S6 941 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.74□□□□□ -0.21
NUP54-216ENST00000514901 SERTAD3Q9UJW9 196 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 V9GYY5 206 aaPredicted RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 MAP1BP46821 2468 aaKnown RBP13.74□□□□□ -0.21
NUP54-216ENST00000514901 ASPMQ8IZT6 3477 aa13.74□□□□□ -0.21
NUP54-216ENST00000514901 WDFY3Q8IZQ1 3526 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 A0A096LPK6 155 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 IQANK1A0A1B0GTG1 560 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 STMND1H3BQB6 276 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 RRP8O43159 456 aaKnown RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 GUCA1CO95843 209 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 ALDOAP04075 364 aaKnown RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 COL6A2P12110 1019 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 GRIA3P42263 894 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 NAE1Q13564 534 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 THEMIS2Q5TEJ8 643 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 KIAA1614Q5VZ46 1190 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 ICE2Q659A1 982 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 CAPN13Q6MZZ7 669 aaPredicted RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 KLC3Q6P597 504 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 TIFABQ6ZNK6 161 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 GPSM1Q86YR5 675 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 TCAIMQ8N3R3 496 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 PPFIBP2Q8ND30 876 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 OR56A3Q8NH54 315 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 AENQ8WTP8 325 aaKnown RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 N4BP2L2Q92802 583 aaPredicted RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 CAVIN3Q969G5 261 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 CABS1Q96KC9 395 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 MIPEPQ99797 713 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 CTRCQ99895 268 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 HAUS8Q9BT25 410 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 SGPP1Q9BX95 441 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 DPH1Q9BZG8 443 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 KLHL25Q9H0H3 589 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 APMAPQ9HDC9 416 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 PSMC3IPQ9P2W1 217 aaPredicted RBP13.73□□□□□ -0.21
NUP54-216ENST00000514901 IKZF3Q9UKT9 509 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 RAB21Q9UL25 225 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 SNX7Q9UNH6 387 aa13.73□□□□□ -0.21
NUP54-216ENST00000514901 HEATR5BQ9P2D3 2071 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms