RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 FOXL2P58012 376 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PPP1CAP62136 330 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PHC1P78364 1004 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CCL7P80098 99 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 HHEXQ03014 270 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PDIA2Q13087 525 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GRM3Q14832 879 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SHBQ15464 509 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 MOGQ16653 247 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 DEFB110Q30KQ9 67 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 UBE2UQ5VVX9 321 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 DPPA4Q7L190 304 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GPR141Q7Z602 305 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 RABEPKQ7Z6M1 372 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 VASH2Q86V25 355 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PIANPQ8IYJ0 282 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PRELID2Q8N945 189 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KDM1BQ8NB78 822 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 OR8K3Q8NH51 312 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF599Q96NL3 588 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 OR2M4Q96R27 311 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GFM1Q96RP9 751 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 RAD21L1Q9H4I0 556 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 BFARQ9NZS9 450 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ZNF229Q9UJW7 825 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 RPH3AQ9Y2J0 694 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 AAR2Q9Y312 384 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 FUOMA2VDF0 154 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CSO75390 466 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 IFNA14P01570 189 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ITPKBP27987 946 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 NMBRP28336 390 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 STT3AP46977 705 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CSNK2BP67870 215 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SEMA3AQ14563 771 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KCNAB1Q14722 419 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SPDYCQ5MJ68 293 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CYB5R2Q6BCY4 276 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 OGFOD2Q6N063 350 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SERPINA9Q86WD7 417 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 TRIM69Q86WT6 500 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 STX12Q86Y82 276 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SPATA6LQ8N4H0 392 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 METTL27Q8N6F8 245 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SLC37A2Q8TED4 501 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 MAGEB10Q96LZ2 347 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 USP29Q9HBJ7 922 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 FBXO6Q9NRD1 293 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SMYD2Q9NRG4 433 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SYBUQ9NX95 663 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KCNK4Q9NYG8 393 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ASF1AQ9Y294 204 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ANKRD36A6QL64 1941 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM114B3SHH9 223 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 E5RI56 91 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CASQ2O14958 399 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 BIRC5O15392 142 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KLK10O43240 276 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SOCS5O75159 536 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 NDUFS3O75489 264 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KRT37O76014 449 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CSF2P04141 144 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 EIF2S1P05198 315 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 KRT8P05787 483 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GLAP06280 429 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CEACAM5P06731 702 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CDK4P11802 303 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CEACAM1P13688 526 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 HOXB3P14651 431 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PVRP15151 417 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CKMT2P17540 419 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 POLR2CP19387 275 aaPredicted RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CFL1P23528 166 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PDHA2P29803 388 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 SPAM1P38567 509 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 TAGLNQ01995 201 aaKnown RBP7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 MED21Q13503 144 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GRAMD1BQ3KR37 738 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 ARHGAP40Q5TG30 622 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GKN2Q86XP6 184 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 TICAM1Q8IUC6 712 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GLYATL1Q969I3 302 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CCDC120Q96HB5 630 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 IL17FQ96PD4 163 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PIP5K1AQ99755 562 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 GHITMQ9H3K2 345 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 HAO1Q9UJM8 370 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 PCDHGA10Q9Y5H3 936 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 CENPEQ02224 2701 aa7.69□□□□□ -1.18
LIMCH1-219ENST00000514096 TMEM131Q92545 1883 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GIMAP1-GIMAP5A0A087WTJ2 511 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CCDC162PA2VCL2 907 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 KMOO15229 486 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 BMP10O95393 424 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CRTAMO95727 393 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 RECKO95980 971 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ERVK-10P10266 1014 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 CCL4P13236 92 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 ITGAXP20702 1163 aa7.68□□□□□ -1.18
LIMCH1-219ENST00000514096 GMPRP36959 345 aa7.68□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms