RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 P4HA3Q7Z4N8 544 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SLC35F5Q8WV83 523 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CIB1Q99828 191 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SMOQ99835 787 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LOC110117498-PIK3R3F6TDL0 507 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 TSPAN4O14817 238 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 KMOO15229 486 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 GALTP07902 379 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LINGO3P0C6S8 592 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CSF2RAP15509 400 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 PEX2P28328 305 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CBX5P45973 191 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ARHGAP40Q5TG30 622 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF572Q7Z3I7 529 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 TDRPQ86YL5 185 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 DCAF4L2Q8NA75 395 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 SMPDL3AQ92484 453 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 RFKQ969G6 155 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 AJAP1Q9UKB5 411 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 MYOM1P52179 1685 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ELOA3DA6NLF2 546 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CXCR6O00574 342 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 PSIP1O75475 530 aaKnown RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 FAUP35544 74 aaKnown RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 HERVK_113P63132 956 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 BTN3A2P78410 334 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ELOA3BQ3SY89 546 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 RALGPS1Q5JS13 557 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ZNF527Q8NB42 609 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ELOA3Q8NG57 546 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 OR4E2Q8NGC2 313 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 RAB2BQ8WUD1 216 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 PIGKQ92643 395 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 LENG8Q96PV6 779 aaPredicted RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 CDK15Q96Q40 435 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 IFT27Q9BW83 186 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 C1QTNF1Q9BXJ1 281 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ERVK-6Q9BXR3 956 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 USP29Q9HBJ7 922 aa12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ZCCHC3Q9NUD5 404 aaKnown RBP12.85□□□□□ -0.35
PTPRF-215ENST00000496447 ANKRD66B4E2M5 251 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TULP3O75386 442 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 CYB5AP00167 134 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 AP1S2P56377 157 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PPP3R1P63098 170 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 IRF9Q00978 393 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TMEM53Q6P2H8 277 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 LRRC70Q7Z2Q7 622 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PJA1Q8NG27 643 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 HM13Q8TCT9 377 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 OVCA2Q8WZ82 227 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TRIB2Q92519 343 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 CMTM7Q96FZ5 175 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 KLHDC7BQ96G42 594 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 NSMCE3Q96MG7 304 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 MKKSQ9NPJ1 570 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 VPS29Q9UBQ0 182 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 FBXO9Q9UK97 447 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TMEM98Q9Y2Y6 226 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 MT-ND1P03886 318 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 SLC10A3P09131 477 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PRDX6P30041 224 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 IDH3AP50213 366 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PITRM1Q5JRX3 1037 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PLA2G15Q8NCC3 412 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 GALNT6Q8NCL4 622 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 NCSTNQ92542 709 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 C11orf16Q9NQ32 467 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 EMC3Q9P0I2 261 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 DHRS7Q9Y394 339 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 MPZL2O60487 215 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 LBX1P52954 281 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 C6orf89Q6UWU4 347 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 RASSF6Q6ZTQ3 369 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 UTS2BQ765I0 119 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 THAP5Q7Z6K1 395 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 SLC22A15Q8IZD6 547 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TFGQ92734 400 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 CLPTM1LQ96KA5 538 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 P2RY13Q9BPV8 354 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 RNF121Q9H920 327 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 PMF1-BGLAPU3KQ54 211 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 CDC7O00311 574 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 RGS10O43665 173 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 TMEM63AO94886 807 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 GADD45GO95257 159 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 KLF8O95600 359 aaPredicted RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 THRBP10828 461 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 POU2F1P14859 743 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 GFOD2Q3B7J2 385 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 UBAP2Q5T6F2 1119 aaKnown RBP12.84□□□□□ -0.35
PTPRF-215ENST00000496447 FATE1Q969F0 183 aa12.84□□□□□ -0.35
PTPRF-215ENST00000496447 ADAMTS3O15072 1205 aa12.83□□□□□ -0.35
PTPRF-215ENST00000496447 SLC30A8Q8IWU4 369 aa12.83□□□□□ -0.35
PTPRF-215ENST00000496447 TMEM156Q8N614 296 aa12.83□□□□□ -0.35
PTPRF-215ENST00000496447 BADQ92934 168 aa12.83□□□□□ -0.35
PTPRF-215ENST00000496447 SLC25A36Q96CQ1 311 aa12.83□□□□□ -0.35
PTPRF-215ENST00000496447 SLC32A1Q9H598 525 aa12.83□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 83.9 ms