RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 CRNNQ9UBG3 495 aaPredicted RBP5.38□□□□□ -1.55
USP40-213ENST00000483216 CTNNA3Q9UI47 895 aa5.38□□□□□ -1.55
USP40-213ENST00000483216 RPS6KA6Q9UK32 745 aa5.38□□□□□ -1.55
USP40-213ENST00000483216 TNRQ92752 1358 aa5.38□□□□□ -1.55
USP40-213ENST00000483216 YTHDC2Q9H6S0 1430 aaKnown RBP5.38□□□□□ -1.55
USP40-213ENST00000483216 A0A1B0GUL7 405 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 A0A1W2PN81 502 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 HYKKA2RU49 373 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 GOLGA6L19H0YKK7 550 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 SLU7O95391 586 aaKnown RBP5.37□□□□□ -1.55
USP40-213ENST00000483216 PIGNO95427 931 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 OR2T7P0C7T2 308 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 NR2F1P10589 423 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 CHRNA7P36544 502 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 GTF2A1P52655 376 aaPredicted RBP5.37□□□□□ -1.55
USP40-213ENST00000483216 CX3CL1P78423 397 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 PMP22Q01453 160 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 TPD52L1Q16890 204 aaPredicted RBP5.37□□□□□ -1.55
USP40-213ENST00000483216 TMEM211Q6ICI0 200 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 NOTCH2NLQ7Z3S9 236 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 PCGF5Q86SE9 256 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 COMMD2Q86X83 199 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 FAM114A1Q8IWE2 563 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 DNAJC22Q8N4W6 341 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 TRIML1Q8N9V2 468 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 ZBTB8BQ8NAP8 495 aaPredicted RBP5.37□□□□□ -1.55
USP40-213ENST00000483216 OLIG1Q8TAK6 271 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 GOLGA5Q8TBA6 731 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 OLFM1Q99784 485 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 SLC35C2Q9NQQ7 365 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 DDX19AQ9NUU7 478 aaKnown RBP5.37□□□□□ -1.55
USP40-213ENST00000483216 FLRT3Q9NZU0 649 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 A2ML1A8K2U0 1454 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 DLC1Q96QB1 1528 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 C3P01024 1663 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 ANKRD26Q9UPS8 1709 aa5.37□□□□□ -1.55
USP40-213ENST00000483216 KIF26BQ2KJY2 2108 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 IGHV4-61A0A0C4DH41 118 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 DNM1LO00429 736 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 GAPDHSO14556 408 aaPredicted RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 RNASEH1O60930 286 aaKnown RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 ERLIN1O75477 346 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 NADKO95544 446 aaPredicted RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 WDPCPO95876 746 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 IGHV4-59P01825 116 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 EFNA1P20827 205 aaPredicted RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 CEACAM8P31997 349 aaPredicted RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 MATR3P43243 847 aaKnown RBP eCLIP5.36□□□□□ -1.556e-8■■■■■ 28.8
USP40-213ENST00000483216 SLC9A3P48764 834 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 LMAN1P49257 510 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 KCNJ10P78508 379 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 CBWD6Q4V339 395 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 CBWD3Q5JTY5 395 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 DCAF10Q5QP82 559 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 GARNL3Q5VVW2 1013 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 ATL3Q6DD88 541 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 SH2D5Q6ZV89 423 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 TMPRSS11FQ6ZWK6 438 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 FGFBP3Q8TAT2 258 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 TMEM143Q96AN5 459 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 GCNAQ96QF7 691 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 NUDT16L1Q9BRJ7 211 aaKnown RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 STK26Q9P289 416 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 PPIEQ9UNP9 301 aaKnown RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 RIMS2Q9UQ26 1411 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 IQSEC2Q5JU85 1478 aa5.36□□□□□ -1.55
USP40-213ENST00000483216 SETD1AO15047 1707 aaKnown RBP5.36□□□□□ -1.55
USP40-213ENST00000483216 MED14O60244 1454 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 FAM135BQ49AJ0 1406 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 A0A1W2PP64 1363 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 STK36Q9NRP7 1315 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 TMEM221A6NGB7 291 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 PSMD14O00487 310 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 PES1O00541 588 aaKnown RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 ATP6V0E1O15342 81 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 PRKRAO75569 313 aaKnown RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 ERAL1O75616 437 aaKnown RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 EML2O95834 649 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 EDN1P05305 212 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 ALDH4A1P30038 563 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 CASQ1P31415 396 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 CDH13P55290 713 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 PRKCZQ05513 592 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 HSP90B2PQ58FF3 399 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 RNASEH2BQ5TBB1 312 aaKnown RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 WDR78Q5VTH9 848 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 ZNF383Q8NA42 475 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 OR13J1Q8NGT2 312 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 WBP2Q969T9 261 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 EXOC4Q96A65 974 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 SPACA9Q96E40 222 aaPredicted RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 NSL1Q96IY1 281 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 PRAM1Q96QH2 718 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 ABHD1Q96SE0 405 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 ASCL2Q99929 193 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 WNT5BQ9H1J7 359 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 EQTNQ9NQ60 294 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 CPSF2Q9P2I0 782 aaKnown RBP5.35□□□□□ -1.55
USP40-213ENST00000483216 MORF4L1Q9UBU8 362 aa5.35□□□□□ -1.55
USP40-213ENST00000483216 ZDHHC2Q9UIJ5 367 aa5.35□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms