RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 LRRC6Q86X45 466 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 PPHLN1Q8NEY8 458 aaKnown RBP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 OR11G2Q8NGC1 345 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 OR1N1Q8NGS0 311 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 MOCOSQ96EN8 888 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 IL17FQ96PD4 163 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 SPSB2Q99619 263 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 LACRTQ9GZZ8 138 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 RAB6BQ9NRW1 208 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 CATSPERZQ9NTU4 200 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 UTP6Q9NYH9 597 aaKnown RBP12.72□□□□□ -0.37
HMGB3-204ENST00000448905 SLC2A6Q9UGQ3 507 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 NTNG1Q9Y2I2 539 aa12.72□□□□□ -0.37
HMGB3-204ENST00000448905 NSG1A0A0A6YYJ2 146 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 IQCF5A8MTL0 148 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 MAP2K7O14733 419 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 PCDH17O14917 1159 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 CD3EAPO15446 510 aaKnown RBP12.71□□□□□ -0.37
HMGB3-204ENST00000448905 EIF2S1P05198 315 aaKnown RBP12.71□□□□□ -0.37
HMGB3-204ENST00000448905 UQCRHP07919 91 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ZGLP1P0C6A0 271 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ICAM2P13598 275 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 AP2B1P63010 937 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ARG2P78540 354 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ACVR1Q04771 509 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 MFAP5Q13361 173 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 MUM1Q2TAK8 710 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 PCID2Q5JVF3 399 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 SP5Q6BEB4 398 aaPredicted RBP12.71□□□□□ -0.37
HMGB3-204ENST00000448905 TAX1BP1Q86VP1 789 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 TICAM1Q8IUC6 712 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 VRK3Q8IV63 474 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 CCDC89Q8N998 374 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 STT3BQ8TCJ2 826 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ZNF285Q96NJ3 590 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 MIPEPQ99797 713 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 YIPF2Q9BWQ6 316 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 OLAHQ9NV23 265 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 CIDEBQ9UHD4 219 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 GNPTGQ9UJJ9 305 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ENTPD4Q9Y227 616 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 R3HDM2Q9Y2K5 976 aaKnown RBP12.71□□□□□ -0.37
HMGB3-204ENST00000448905 MAU2Q9Y6X3 613 aa12.71□□□□□ -0.37
HMGB3-204ENST00000448905 ESPL1Q14674 2120 aa12.71□□□□□ -0.38
HMGB3-204ENST00000448905 VPS26AO75436 327 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 JRKO75564 520 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 WFS1O76024 890 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 C1orf105O95561 183 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 APRTP07741 180 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MCM3P25205 808 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 CMPK1P30085 196 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 EMP2P54851 167 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 EMP3P54852 163 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 KLC1Q07866 573 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 GRB7Q14451 532 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 ZRSR2Q15696 482 aaKnown RBP12.7□□□□□ -0.38
HMGB3-204ENST00000448905 C4orf22Q6V702 233 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MICALCLQ6ZW33 695 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF534Q76KX8 674 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 NDUFAF7Q7L592 441 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 SRRM1Q8IYB3 904 aaKnown RBP12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MPP5Q8N3R9 675 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 SUN3Q8TAQ9 357 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 HMGCLL1Q8TB92 370 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 ZDHHC19Q8WVZ1 309 aaPredicted RBP12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MAGEB10Q96LZ2 347 aaPredicted RBP12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MENTQ9BUN1 341 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 ZNF160Q9HCG1 818 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 CHRAC1Q9NRG0 131 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 CTSFQ9UBX1 484 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 C3orf18Q9UK00 162 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 MRPS2Q9Y399 296 aaKnown RBP12.7□□□□□ -0.38
HMGB3-204ENST00000448905 TCAF1Q9Y4C2 921 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 KLK4Q9Y5K2 254 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 CSAG2Q9Y5P2 127 aa12.7□□□□□ -0.38
HMGB3-204ENST00000448905 TRAV17A0A0B4J275 112 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 A0A0J9YVX5 310 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 H3BMM5 538 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 TXNDC9O14530 226 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 LIASO43766 372 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PRICKLE3O43900 615 aaPredicted RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 CTSVO60911 334 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PHF2O75151 1096 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 ALOX12BO75342 701 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 FTCDO95954 541 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 STSP08842 583 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PKMP14618 531 aaKnown RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 FBLP22087 321 aaKnown RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 HSD17B2P37059 387 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 NPY2RP49146 381 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 SEL1L2Q5TEA6 688 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 C1QL3Q5VWW1 255 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 ATG9BQ674R7 924 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 MRNIPQ6NTE8 343 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 COX15Q7KZN9 410 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 PRSS58Q8IYP2 241 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 KRT222Q8N1A0 295 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 METTL27Q8N6F8 245 aaPredicted RBP12.69□□□□□ -0.38
HMGB3-204ENST00000448905 CATSPER1Q8NEC5 780 aa12.69□□□□□ -0.38
HMGB3-204ENST00000448905 OR2L3Q8NG85 312 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms