RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 DNAJC11Q9NVH1 559 aa11.57□□□□□ -0.56
MSH6-204ENST00000445503 THUMPD1Q9NXG2 353 aaKnown RBP11.57□□□□□ -0.56
MSH6-204ENST00000445503 IL17CQ9P0M4 197 aa11.57□□□□□ -0.56
MSH6-204ENST00000445503 HECAQ9UBI9 543 aaPredicted RBP11.57□□□□□ -0.56
MSH6-204ENST00000445503 RAB23Q9ULC3 237 aa11.57□□□□□ -0.56
MSH6-204ENST00000445503 A8MU76 341 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 H3BN98 237 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CKBP12277 381 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 OR1E2P47887 323 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CPTPQ5TA50 214 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 TXNDC8Q6A555 127 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 C8orf82Q6P1X6 216 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 CLECL1Q8IZS7 167 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ZNF548Q8NEK5 533 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 TRPV1Q8NER1 839 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 TMEM159Q96B96 161 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 OTULINQ96BN8 352 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 LGALS12Q96DT0 336 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 GPC6Q9Y625 555 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 STC2O76061 302 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 PRLP01236 227 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 AZGP1P25311 298 aaKnown RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 GTF2E2P29084 291 aaKnown RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 IDUAP35475 653 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 SOX6P35712 828 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CTSKP43235 329 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 MAGEA11P43364 429 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 SUOXP51687 545 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 NKX2-5P52952 324 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 RING1Q06587 406 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ABHD18Q0P651 414 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 HKDC1Q2TB90 917 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 Q6ZPB1 254 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 DPP10Q8N608 796 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 HJURPQ8NCD3 748 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 FAR1Q8WVX9 515 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 KCNS3Q9BQ31 491 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 SLC32A1Q9H598 525 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 BRD9Q9H8M2 597 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 GPBP1L1Q9HC44 474 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 WDR70Q9NW82 654 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ABCG2Q9UNQ0 655 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 KPNA5O15131 536 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ANXA4P09525 319 aaPredicted RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 EBLN1P0CF75 366 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 PRPS2P11908 318 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 DNAJA1P31689 397 aaKnown RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 RPP38P78345 283 aaKnown RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 DMPKQ09013 629 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CLCA4Q14CN2 919 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 USP45Q70EL2 814 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 TMEM179BQ7Z7N9 219 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 AUTS2Q8WXX7 1259 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 MRPS31Q92665 395 aaKnown RBP11.56□□□□□ -0.56
MSH6-204ENST00000445503 MAL2Q969L2 176 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 APIPQ96GX9 242 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 TCF25Q9BQ70 676 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 SGK2Q9HBY8 427 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 PALMDQ9NP74 551 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CCNB1IP1Q9NPC3 277 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ELOVL2Q9NXB9 296 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 MAP4K5Q9Y4K4 846 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 CPQQ9Y646 472 aa11.56□□□□□ -0.56
MSH6-204ENST00000445503 ARNTLO00327 626 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 TFECO14948 347 aaPredicted RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 ADAM12O43184 909 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 SMAD6O43541 496 aaKnown RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 PQBP1O60828 265 aaKnown RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 SEC14L2O76054 403 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 KRT75O95678 551 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 HPRP00739 348 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 RRM2P31350 389 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 HNF1BP35680 557 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 INPP1P49441 399 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 CLCN4P51793 760 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 RUNX1T1Q06455 604 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 CD300CQ08708 224 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 MTA1Q13330 715 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 PCBP2Q15366 365 aaKnown RBP eCLIP11.55□□□□□ -0.561e-7■■■■■ 32.2
MSH6-204ENST00000445503 TIGD6Q17RP2 521 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 TAS1R1Q7RTX1 841 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 CYP4Z1Q86W10 505 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 OR4A15Q8NGL6 344 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 VPS35Q96QK1 796 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 RHNO1Q9BSD3 238 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 IL26Q9NPH9 171 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 DCAF13Q9NV06 445 aaKnown RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 CCNDBP1O95273 360 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 KLKB1P03952 638 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 GJA1P17302 382 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 TGFBR1P36897 503 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 CDKN2CP42773 168 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 EPHB3P54753 998 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 RPS3AP61247 264 aaKnown RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 ACVR1Q04771 509 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 CD300LGQ6UXG3 332 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 MYDGFQ969H8 173 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 ACAT2Q9BWD1 397 aa11.55□□□□□ -0.56
MSH6-204ENST00000445503 PAK1IP1Q9NWT1 392 aaPredicted RBP11.55□□□□□ -0.56
MSH6-204ENST00000445503 ENPP5Q9UJA9 477 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms