RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 KLHL3Q9UH77 587 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 LNPEPQ9UIQ6 1025 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 BTRCQ9Y297 605 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 PCDHGA8Q9Y5G5 932 aa11.98□□□□□ -0.49
USP40-205ENST00000430158 IGKV1-8A0A0C4DH67 115 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 CCDC189A1A4V9 331 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 GSAPA4D1B5 854 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TRABD2BA6NFA1 517 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TARM1B6A8C7 271 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TAPBPO15533 448 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 HCRTR1O43613 425 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 CDH16O75309 829 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 DXOO77932 396 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 FKBP9O95302 570 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 HGFP14210 728 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TFEBP19484 476 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 OAS2P29728 719 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 GGT5P36269 586 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 SLC6A12P48065 614 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ZNF844Q08AG5 666 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PRKAA1Q13131 559 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 EIF3IQ13347 325 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 ACAP2Q15057 778 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TGFBIQ15582 683 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 C18orf21Q32NC0 220 aaPredicted RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 LGSNQ5TDP6 509 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 KIAA1614Q5VZ46 1190 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 FCRL6Q6DN72 434 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ARMC6Q6NXE6 501 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 AGTRAPQ6RW13 159 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 SUSD1Q6UWL2 747 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 RAB11FIP2Q7L804 512 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 TBC1D1Q86TI0 1168 aaPredicted RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 TAX1BP1Q86VP1 789 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 KMT5CQ86Y97 462 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 CNPY4Q8N129 248 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PDPRQ8NCN5 879 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 AGBL5Q8NDL9 886 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 OR2L3Q8NG85 312 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PMEPA1Q969W9 287 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 RHBDF1Q96CC6 855 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 OR4K3Q96R72 315 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ROPN1BQ9BZX4 212 aaPredicted RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 STRADBQ9C0K7 418 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 VPS11Q9H270 941 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ALG9Q9H6U8 611 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 POLR1BQ9H9Y6 1135 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ROPN1Q9HAT0 212 aaPredicted RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 FAM60AQ9NP50 221 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ASCL3Q9NQ33 180 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 INTS7Q9NVH2 962 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 ARL15Q9NXU5 204 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 UTP6Q9NYH9 597 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 TBK1Q9UHD2 729 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PTBP2Q9UKA9 531 aaKnown RBP11.97□□□□□ -0.49
USP40-205ENST00000430158 TLK1Q9UKI8 766 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 SATB2Q9UPW6 733 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 SH2B3Q9UQQ2 575 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PLAAQ9Y263 795 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 LOXL2Q9Y4K0 774 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 ASPMQ8IZT6 3477 aa11.97□□□□□ -0.49
USP40-205ENST00000430158 PTPRQQ9UMZ3 2332 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 A0A0J9YY10 115 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 IQANK1A0A1B0GTG1 560 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ISM1B1AKI9 464 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 B4E171 279 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 H3BMH7 237 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 PLD2O14939 933 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 KLK8O60259 260 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 KERAO60938 352 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ZBTB11O95625 1053 aaPredicted RBP11.96□□□□□ -0.49
USP40-205ENST00000430158 SYF2O95926 243 aaKnown RBP11.96□□□□□ -0.49
USP40-205ENST00000430158 MSL3P1P0C860 447 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 FOLR1P15328 257 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 H2AFXP16104 143 aaPredicted RBP11.96□□□□□ -0.49
USP40-205ENST00000430158 NPPBP16860 134 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 TSPAN7P41732 249 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 GRIA3P42263 894 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SEPHS1P49903 392 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SH3BP2P78314 561 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 MC2RQ01718 297 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 NAE1Q13564 534 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 TAF1BQ53T94 588 aaPredicted RBP11.96□□□□□ -0.49
USP40-205ENST00000430158 TNFAIP8L3Q5GJ75 292 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 TECRLQ5HYJ1 363 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 GPSM1Q86YR5 675 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SYTL1Q8IYJ3 562 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 FBXO39Q8N4B4 442 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 DNAJC22Q8N4W6 341 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 STAG3L4Q8TBR4 150 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ACMSDQ8TDX5 336 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SLC22A18Q96BI1 424 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SLC46A1Q96NT5 459 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 TMEM79Q9BSE2 394 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SPRY4Q9C004 299 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ATG10Q9H0Y0 220 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SYNPO2LQ9H987 977 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 SLC6A20Q9NP91 592 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ENAMQ9NRM1 1142 aa11.96□□□□□ -0.49
USP40-205ENST00000430158 ANGPTL2Q9UKU9 493 aa11.96□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms