RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 MTHFRP42898 656 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 TRPC1P48995 793 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ALDH7A1P49419 539 aaKnown RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 COMPP49747 757 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CDH13P55290 713 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SELENOVP59797 346 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 DEFB103AP81534 67 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CDK3Q00526 305 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 PTGISQ16647 500 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SYT16Q17RD7 645 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 VWC2Q2TAL6 325 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD20A4Q4UJ75 823 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ATP13A5Q4VNC0 1218 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 KRTCAP3Q53RY4 240 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD20A8PQ5CZ79 823 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 GLRA4Q5JXX5 417 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD20A2Q5SQ80 823 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD20A1Q5TYW2 823 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD20A3Q5VUR7 823 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 IGFL4Q6B9Z1 124 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 HIST2H2BCQ6DN03 193 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 HIST2H2BDQ6DRA6 164 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 C11orf57Q6ZUT1 292 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MON1BQ7L1V2 547 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 DET1Q7L5Y6 550 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 OTOAQ7RTW8 1153 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 TRAPPC11Q7Z392 1133 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ABI3BPQ7Z7G0 1075 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 LDLRAD3Q86YD5 345 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ANKRD13BQ86YJ7 626 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 GPSM1Q86YR5 675 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ERC1Q8IUD2 1116 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 FBXO16Q8IX29 292 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 C10orf67Q8IYJ2 551 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 DSELQ8IZU8 1212 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 NDUFAF2Q8N183 169 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SIX6OS1Q8N1H7 587 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 AADATQ8N5Z0 425 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 GCSAMQ8N6F7 178 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MIGA1Q8NAN2 632 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SPC24Q8NBT2 197 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 FAM98AQ8NCA5 519 aaKnown RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SMRP1Q8NCR6 262 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ENGASEQ8NFI3 743 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 OR8H1Q8NGG4 311 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MOSPD2Q8NHP6 518 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 THAP6Q8TBB0 222 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ARRDC2Q8TBH0 407 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 KCNE4Q8WWG9 221 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 APBB2Q92870 758 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 EXT2Q93063 718 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 LRFN5Q96NI6 719 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 DDOQ99489 341 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SEPHS2Q99611 448 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 HAUS8Q9BT25 410 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 TRMOQ9BU70 441 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 TRIM6Q9C030 488 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 WNT5BQ9H1J7 359 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 RAD21L1Q9H4I0 556 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ZSCAN16Q9H4T2 348 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CATSPERBQ9H7T0 1116 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 C17orf75Q9HAS0 396 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CLK4Q9HAZ1 481 aaKnown RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 PRMT7Q9NVM4 692 aaPredicted RBP3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MCM9Q9NXL9 1143 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 OR6C3Q9NZP0 311 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MSRB1Q9NZV6 116 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 CACNG4Q9UBN1 327 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SLC24A2Q9UI40 661 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 BLOC1S6Q9UL45 172 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 SNX7Q9UNH6 387 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 PCDHGA5Q9Y5G8 931 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 ZMYM2Q9UBW7 1377 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 MYH1P12882 1939 aa3.97□□□□□ -1.77
HMGB3-203ENST00000430118 GTPBP10A4D1E9 387 aaKnown RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 A6NNC1 897 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 LOC730098B7Z3J9 87 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ZNF814B7Z6K7 855 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 E5RJQ4 531 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 MS4A18H0YCH9 400 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 DDX39AO00148 427 aaKnown RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 PDLIM1O00151 329 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 DVL1O14640 695 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 HS3ST1O14792 307 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 CLIC2O15247 247 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 FZD7O75084 574 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 SLC22A3O75751 556 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 EGFP01133 1207 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 CXCL10P02778 98 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 MMP1P03956 469 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 THEGLP0DJG4 465 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 HLA-DPA1P20036 260 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 ASCL1P50553 236 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 INHBCP55103 352 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 GABPAQ06546 454 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 COASYQ13057 564 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 IFT88Q13099 833 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 MELKQ14680 651 aa3.96□□□□□ -1.78
HMGB3-203ENST00000430118 DAZAP2Q15038 168 aaPredicted RBP3.96□□□□□ -1.78
HMGB3-203ENST00000430118 MEP1AQ16819 746 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms