RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 PCLAFQ15004 111 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 CCSMST1Q4G0I0 132 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ZNF678Q5SXM1 525 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 TTC19Q6DKK2 380 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 IRGCQ6NXR0 463 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 LCTLQ6UWM7 567 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 XKR5Q6UX68 686 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 MBOAT1Q6ZNC8 495 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 DBX2Q6ZNG2 339 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ADCK2Q7Z695 626 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 MYLK4Q86YV6 388 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 RASGRP3Q8IV61 690 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 KRT78Q8N1N4 520 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 C2orf73Q8N5S3 287 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 PPFIBP2Q8ND30 876 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 OR56A3Q8NH54 315 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 MDM1Q8TC05 714 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 NETO1Q8TDF5 533 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 DENND1AQ8TEH3 1009 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 N4BP2L2Q92802 583 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 UBE2E3Q969T4 207 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 REPS1Q96D71 796 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 L3HYPDHQ96EM0 354 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 IL17FQ96PD4 163 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 CD180Q99467 661 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 TBC1D10AQ9BXI6 508 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ACTR8Q9H981 624 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 AKAP7Q9P0M2 348 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 TAC3Q9UHF0 121 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 IKZF3Q9UKT9 509 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 SNX7Q9UNH6 387 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 SLC22A14Q9Y267 594 aa9.77□□□□□ -0.85
CD44-207ENST00000425428 ASCC3Q8N3C0 2202 aaKnown RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 COL5A1P20908 1838 aaPredicted RBP9.77□□□□□ -0.85
CD44-207ENST00000425428 OR5K3A6NET4 321 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 TARM1B6A8C7 271 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 POLR3GO15318 223 aaPredicted RBP9.76□□□□□ -0.85
CD44-207ENST00000425428 SH3BP5O60239 455 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 RASSF9O75901 435 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 ERGP11308 486 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 MTHFD2P13995 350 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 CAPZBP47756 277 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 KCNC1P48547 511 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 CCR8P51685 355 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 LIMK1P53667 647 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 IRF8Q02556 426 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 CLCQ05315 142 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 CYB5D1Q6P9G0 228 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 SUSD1Q6UWL2 747 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 ZNF761Q86XN6 746 aaPredicted RBP9.76□□□□□ -0.85
CD44-207ENST00000425428 CARFQ8N187 725 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 PYCR2Q96C36 320 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 MAGEB18Q96M61 343 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 GFM1Q96RP9 751 aaKnown RBP9.76□□□□□ -0.85
CD44-207ENST00000425428 AIF1LQ9BQI0 150 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 CCDC3Q9BQI4 270 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 MECRQ9BV79 373 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 C12orf65Q9H3J6 166 aaKnown RBP9.76□□□□□ -0.85
CD44-207ENST00000425428 IPPKQ9H8X2 491 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 SEMA4BQ9NPR2 832 aaPredicted RBP9.76□□□□□ -0.85
CD44-207ENST00000425428 ACTR10Q9NZ32 417 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 OGFRQ9NZT2 677 aa9.76□□□□□ -0.85
CD44-207ENST00000425428 TMX2-CTNND1H3BSU7 103 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 UGDHO60701 494 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CPNE6O95741 557 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 DHRS4L1P0CG22 281 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 BGNP21810 368 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ACP1P24666 158 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 MDH1P40925 334 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 AGTR2P50052 363 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 PKNOX1P55347 436 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 OR1D5P58170 312 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 LCP2Q13094 533 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SPIDRQ14159 915 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 RCN2Q14257 317 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SLC5A12Q1EHB4 618 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 PROX2Q3B8N5 592 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 XKR6Q5GH73 641 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 TMTC4Q5T4D3 741 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ICE2Q659A1 982 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 GUSBP11Q6P575 273 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ZNF438Q7Z4V0 828 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 MILR1Q7Z6M3 343 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CRLF3Q8IUI8 442 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SLC5A11Q8WWX8 675 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 JPH3Q8WXH2 748 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 TMEM237Q96Q45 408 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ACAT2Q9BWD1 397 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 SGPP1Q9BX95 441 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 C1QTNF3Q9BXJ4 246 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 RAB33BQ9H082 229 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ILKAPQ9H0C8 392 aaPredicted RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 NSRP1Q9H0G5 558 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 LRRN3Q9H3W5 708 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 PARD6AQ9NPB6 346 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 THAP1Q9NVV9 213 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 ANKMY1Q9P2S6 941 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 EPHA6Q9UF33 1036 aa9.75□□□□□ -0.85
CD44-207ENST00000425428 CDV3Q9UKY7 258 aaKnown RBP9.75□□□□□ -0.85
CD44-207ENST00000425428 OTOGLQ3ZCN5 2332 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms