RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 Q8N9G6 341 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-204ENST00000423058 CPT1CQ8TCG5 803 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PTPN18Q99952 460 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ALG2Q9H553 416 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 ACTL8Q9H568 366 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 MARCH7Q9H992 704 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PCDHGB6Q9Y5F9 930 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 PTPRMP28827 1452 aa6.72□□□□□ -1.33
SCN1A-204ENST00000423058 DLG5Q8TDM6 1919 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 ISPDA4D126 451 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 LAMTOR5O43504 91 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 SCELO95171 688 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 ATF4P18848 351 aaPredicted RBP6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CARD16Q5EG05 197 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 YIPF7Q8N8F6 280 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 ROPN1LQ96C74 230 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CMTM7Q96FZ5 175 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 IL17RBQ9NRM6 502 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CENPMQ9NSP4 180 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 UBIAD1Q9Y5Z9 338 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 BORCS7-ASMTA0A0B4J1R7 106 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 HHLA1C9JL84 531 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CYP11A1P05108 521 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 IFNGR1P15260 489 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 SLC15A1P46059 708 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 HSPA7P48741 367 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 LCP2Q13094 533 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 ARSIQ5FYB1 569 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 ZYG11AQ6WRX3 759 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 BBS12Q6ZW61 710 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 UTS2BQ765I0 119 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CMTR2Q8IYT2 770 aaKnown RBP6.71□□□□□ -1.33
SCN1A-204ENST00000423058 SPERTQ8NA61 448 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 OR5T2Q8NGG2 359 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 OR10Q1Q8NGQ4 319 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 OR6N1Q8NGY5 312 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 BORCS7Q96B45 105 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 PPM1MQ96MI6 270 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 TRPV4Q9HBA0 871 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 LAMP5Q9UJQ1 280 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 CPQQ9Y646 472 aa6.71□□□□□ -1.33
SCN1A-204ENST00000423058 TRMUO75648 421 aaKnown RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 CSNK2A2P19784 350 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PLEKHN1Q494U1 663 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 MR1Q95460 341 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 BORCS5Q969J3 196 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 RCN3Q96D15 328 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FUBP3Q96I24 572 aaKnown RBP eCLIP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 GPR21Q99679 349 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 NPAS2Q99743 824 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF350Q9GZX5 532 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 TBC1D17Q9HA65 648 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 GRHPRQ9UBQ7 328 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 RPL36Q9Y3U8 105 aaKnown RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 MAN2B1O00754 1011 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ACTL6BO94805 426 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FESP07332 822 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PEPDP12955 493 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 HOXB2P14652 356 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FOLH1Q04609 750 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FAM76BQ5HYJ3 339 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PERM1Q5SV97 790 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 IDNKQ5T6J7 187 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 NT5DC1Q5TFE4 455 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 LCLAT1Q6UWP7 414 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ARSKQ6UWY0 536 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 S100A7AQ86SG5 101 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 NANOS1Q8WY41 292 aaKnown RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FAXDC2Q96IV6 333 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 AGAP2Q99490 1192 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 RNPEPL1Q9HAU8 725 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 SUSD2Q9UGT4 822 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ZNF221Q9UK13 617 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PRAMEF33A0A0G2JMD5 474 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 EML1O00423 815 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PRAMEF10O60809 474 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 CBX6O95503 412 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ABCG1P45844 678 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 SLC10A7Q0GE19 358 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 GRIK2Q13002 908 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 USP43Q70EL4 1123 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 LYSMD3Q7Z3D4 306 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ARHGEF28Q8N1W1 1705 aaKnown RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 FBXL16Q8N461 479 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 ARL14EPQ8N8R7 260 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 THAP6Q8TBB0 222 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 OSTF1Q92882 214 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 KCNN1Q92952 543 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 HMCESQ96FZ2 354 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 CLPTM1LQ96KA5 538 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 CYP2S1Q96SQ9 504 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 DENND2DQ9H6A0 471 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-204ENST00000423058 KCNN3Q9UGI6 736 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 TLR6Q9Y2C9 796 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 SPEF2Q9C093 1822 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 A0A1B0GVI7 797 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 TREHO43280 583 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 TPST2O60704 377 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 PSMD10O75832 226 aa6.71□□□□□ -1.34
SCN1A-204ENST00000423058 CHRNA1P02708 482 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms