RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 LDOC1O95751 146 aaPredicted RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 PROS1P07225 676 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 CCR10P46092 362 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 SLC1A6P48664 564 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 ABCE1P61221 599 aaKnown RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 CDC16Q13042 620 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 RCN2Q14257 317 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 DBX2Q6ZNG2 339 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 FRMD7Q6ZUT3 714 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 ADGRF3Q8IZF5 1079 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 CCDC74AQ96AQ1 378 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 SLC22A18Q96BI1 424 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 AHCYL2Q96HN2 611 aaKnown RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 HAUS8Q9BT25 410 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 PITPNM3Q9BZ71 974 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 ZMYND15Q9H091 742 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 GSTO2Q9H4Y5 243 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 NOL11Q9H8H0 719 aaKnown RBP17.47■□□□□ 0.39
SDC1-203ENST00000403076 IPPKQ9H8X2 491 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 PCDHB11Q9Y5F2 797 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 KCNE2Q9Y6J6 123 aa17.47■□□□□ 0.39
SDC1-203ENST00000403076 GIPC1O14908 333 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 TGM1P22735 817 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 GPR3P46089 330 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 CCNG1P51959 295 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 OR1D5P58170 312 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 SF1Q15637 639 aaKnown RBP17.46■□□□□ 0.39
SDC1-203ENST00000403076 GUSBP11Q6P575 273 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 LCTLQ6UWM7 567 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 KLHDC8AQ8IYD2 350 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 NAT6Q93015 286 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 CNDP2Q96KP4 475 aaKnown RBP17.46■□□□□ 0.39
SDC1-203ENST00000403076 TRMOQ9BU70 441 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 SHCBP1LQ9BZQ2 653 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 DRC3Q9H069 523 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 EML4Q9HC35 981 aaKnown RBP17.46■□□□□ 0.39
SDC1-203ENST00000403076 SPHK1Q9NYA1 384 aa17.46■□□□□ 0.39
SDC1-203ENST00000403076 OR5K3A6NET4 321 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 TCP11X1B4DZS4 312 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 KLF11O14901 512 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 CLGNO14967 610 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 LYPLA1O75608 230 aaPredicted RBP17.45■□□□□ 0.38
SDC1-203ENST00000403076 MLYCDO95822 493 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 CD59P13987 128 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 NPPBP16860 134 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 PSMB5P28074 263 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 SERPINB5P36952 375 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 EPHA4P54764 986 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 NHLH1Q02575 133 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 LCP2Q13094 533 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 KIR2DS3Q14952 304 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 PROX2Q3B8N5 592 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 AMZ1Q400G9 498 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 EFL1Q7Z2Z2 1120 aaKnown RBP17.45■□□□□ 0.38
SDC1-203ENST00000403076 ZNF438Q7Z4V0 828 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 C17orf64Q86WR6 236 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 OR6Y1Q8NGX8 325 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 RSC1A1Q92681 617 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 OR4K3Q96R72 315 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 PHOX2BQ99453 314 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 ZBTB26Q9HCK0 441 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 THAP1Q9NVV9 213 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 FTSJ1Q9UET6 329 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 STK38LQ9Y2H1 464 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 ENTPD2Q9Y5L3 495 aa17.45■□□□□ 0.38
SDC1-203ENST00000403076 LY6G6EA0A0G2JKS1 128 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 A0A1W2PPV9 198 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 EME2A4GXA9 379 aaPredicted RBP17.44■□□□□ 0.38
SDC1-203ENST00000403076 C2orf74A8MZ97 194 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 PPP6CO00743 305 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 ITM2AO43736 263 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 SH3BP5O60239 455 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 OTCP00480 354 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 CKMT1AP12532 417 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 GNAZP19086 355 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 GNGT1P63211 74 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 ARL13AQ5H913 290 aaPredicted RBP17.44■□□□□ 0.38
SDC1-203ENST00000403076 CES4AQ5XG92 561 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 FAM47EQ6ZV65 393 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 MYLK4Q86YV6 388 aaPredicted RBP17.44■□□□□ 0.38
SDC1-203ENST00000403076 NAXDQ8IW45 347 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 NCSTNQ92542 709 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 ZNF395Q9H8N7 513 aaPredicted RBP17.44■□□□□ 0.38
SDC1-203ENST00000403076 ACTR8Q9H981 624 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 MID1IP1Q9NPA3 183 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 ACTR10Q9NZ32 417 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 GPRC5BQ9NZH0 403 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 U3KQA8 63 aa17.44■□□□□ 0.38
SDC1-203ENST00000403076 IGHV1OR21-1A0A087WYE8 117 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 MATN2O00339 956 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 B4GAT1O43505 415 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 GDF9O60383 454 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 CRCPO75575 148 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 CCNDBP1O95273 360 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 CHRNGP07510 517 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 VIMP08670 466 aaKnown RBP17.43■□□□□ 0.38
SDC1-203ENST00000403076 PNLIPP16233 465 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 CMPK1P30085 196 aa17.43■□□□□ 0.38
SDC1-203ENST00000403076 PEBP1P30086 187 aaKnown RBP17.43■□□□□ 0.38
SDC1-203ENST00000403076 CAPZBP47756 277 aa17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms