RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 HIST2H2ACQ16777 129 aaPredicted RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 INAVAQ3KP66 663 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 MFSD14CQ5VZR4 134 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 FUT10Q6P4F1 479 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 VTCN1Q7Z7D3 282 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 RASAL3Q86YV0 1011 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 CCDC71Q8IV32 467 aaPredicted RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 BEND7Q8N7W2 519 aaPredicted RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 SELENOMQ8WWX9 145 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 MYO19Q96H55 970 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ABCG8Q9H221 673 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 RMND5AQ9H871 391 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 ACOT13Q9NPJ3 140 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 NDRG4Q9ULP0 352 aaKnown RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 SAMD4AQ9UPU9 718 aaKnown RBP12.37□□□□□ -0.43
SHMT1-205ENST00000395684 WDR37Q9Y2I8 494 aa12.37□□□□□ -0.43
SHMT1-205ENST00000395684 FRMPD3Q5JV73 1810 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 TRBV5-4A0A0C4DH59 114 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 RFXANKO14593 260 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 AQP9O43315 295 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 KRT6AP02538 564 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 KRT6BP04259 564 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 BPIP17213 487 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 KRT6CP48668 564 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SLC11A1P49279 550 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 CHRNA6Q15825 494 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 INO80DQ53TQ3 878 aaPredicted RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 CATSPEREQ5SY80 951 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 OR4F3Q6IEY1 312 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ADCK1Q86TW2 530 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 TTC29Q8NA56 475 aaPredicted RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 PLD4Q96BZ4 506 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 APIPQ96GX9 242 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ABHD8Q96I13 439 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 HEPHQ9BQS7 1158 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 HERC2P3Q9BVR0 1158 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SLC29A3Q9BZD2 475 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SLIRPQ9GZT3 109 aaKnown RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 RDH14Q9HBH5 336 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 TM9SF3Q9HD45 589 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SACM1LQ9NTJ5 587 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 THG1LQ9NWX6 298 aaKnown RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 GIN1Q9NXP7 522 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SCN3BQ9NY72 215 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 PDP1Q9P0J1 537 aaPredicted RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ERVK-11Q9UQG0 969 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 TTC34A8MYJ7 566 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 NBNO60934 754 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ITGALP20701 1170 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 CCND3P30281 292 aaPredicted RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ST13P50502 369 aaKnown RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 FCGRTP55899 365 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 CDKN3Q16667 212 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 ZCCHC8Q6NZY4 707 aaKnown RBP12.36□□□□□ -0.43
SHMT1-205ENST00000395684 MACC1Q6ZN28 852 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 SLC35B4Q969S0 331 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 LGALS12Q96DT0 336 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 PSD2Q9BQI7 771 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 RASSF1Q9NS23 344 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 VPS51Q9UID3 782 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 HSPE1-MOB4S4R3N1 261 aa12.36□□□□□ -0.43
SHMT1-205ENST00000395684 RGS10O43665 173 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PRPS2P11908 318 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 HOXB6P17509 224 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 RPL17P18621 184 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 DNAJA1P31689 397 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 HNF1BP35680 557 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 RPIAP49247 311 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ARHGDIAP52565 204 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 MAD2L1BPQ15013 274 aaPredicted RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 METTL2BQ6P1Q9 378 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 DSG4Q86SJ6 1040 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SERPINA11Q86U17 422 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PHF10Q8WUB8 498 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TESCQ96BS2 214 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PYCR2Q96C36 320 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 HHIPQ96QV1 700 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ASPSCR1Q9BZE9 553 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SLC32A1Q9H598 525 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 POLE4Q9NR33 117 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SIRT5Q9NXA8 310 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 CRLS1Q9UJA2 301 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 PNMA8BQ9ULN7 279 aaPredicted RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ERVW-1Q9UQF0 538 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 OR51B4Q9Y5P0 310 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 GLYATL1P3A0A0U1RQE8 302 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 C2orf78A6NCI8 922 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ZBBXA8MT70 800 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 UPK3BL1B0FP48 263 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 UPK3BL2E5RIL1 263 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SMAD6O43541 496 aaKnown RBP12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TBL1XO60907 577 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 KCNK5O95279 499 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TRBC1P01850 177 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SEMG1P04279 462 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 LCKP06239 509 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 ANXA5P08758 320 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 KRT20P35900 424 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 SERPINB10P48595 397 aa12.35□□□□□ -0.43
SHMT1-205ENST00000395684 TMED10P49755 219 aaKnown RBP12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms