RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 KCNK4Q9NYG8 393 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TXNDC16Q9P2K2 825 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 LOC105378220A0A1B0GUY1 285 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 B4DGG1 531 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TBX6O95947 436 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 RORAP35398 523 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 AHRP35869 848 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 BDKRB1P46663 353 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ATXN3P54252 364 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 HERVK_113P63132 956 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 HSPA14Q0VDF9 509 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TSNQ15631 228 aaKnown RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 SMU1Q2TAY7 513 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 PPM1JQ5JR12 505 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 MROH9Q5TGP6 573 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 AGTRAPQ6RW13 159 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TBC1D1Q86TI0 1168 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 KCTD4Q8WVF5 259 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF764Q96H86 408 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 FERD3LQ96RJ6 166 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 CTRCQ99895 268 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TRMOQ9BU70 441 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 ERVK-6Q9BXR3 956 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 PPANQ9NQ55 473 aaKnown RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM216Q9P0N5 145 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TRPS1Q9UHF7 1281 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 CDV3Q9UKY7 258 aaKnown RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 PCDHB3Q9Y5E6 796 aa6.76□□□□□ -1.33
LIMA1-202ENST00000394943 V9GYY5 206 aaPredicted RBP6.76□□□□□ -1.33
LIMA1-202ENST00000394943 TRBC2A0A5B9 178 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 NPEPPSL1A6NEC2 478 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 HMGB1P1B2RPK0 211 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 FOXE1O00358 373 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PRAMEF4O60810 478 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SNNO75324 88 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SLC16A8O95907 504 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ADRB1P08588 477 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 F7P08709 466 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ANXA5P08758 320 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ATP5F1P24539 256 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TYK2P29597 1187 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TSFMP43897 325 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 OR1D5P58170 312 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 BMPR2Q13873 1038 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TTMPQ5BVD1 217 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PRAMEF9Q5VWM5 478 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 GRHL2Q6ISB3 625 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 RAB42Q8N4Z0 105 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 MFSD9Q8NBP5 474 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 WDR20Q8TBZ3 569 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SNRNP27Q8WVK2 155 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 GATA6Q92908 595 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF501Q96CX3 271 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ZNF382Q96SR6 550 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 GSTO2Q9H4Y5 243 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 MSRB2Q9Y3D2 182 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ZDBF2Q9HCK1 2354 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 IGLV3-12A0A075B6K2 115 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PRAMEF33A0A0G2JMD5 474 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 RHPN2P1A8MT19 583 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 A8MT66 165 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PHGDHO43175 533 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 MT-CO3P00414 261 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PYGBP11216 843 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TFEBP19484 476 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PRDX3P30048 256 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 HK2P52789 917 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 HYAL2Q12891 473 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 LAPTM5Q13571 262 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 FASTKQ14296 549 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 KIAA1614Q5VZ46 1190 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ICE2Q659A1 982 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 DUS1LQ6P1R4 473 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 GPSM1Q86YR5 675 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 CREB3L4Q8TEY5 395 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ATP6V1G3Q96LB4 118 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 OR2A5Q96R48 311 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TBC1D10AQ9BXI6 508 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SLC26A1Q9H2B4 701 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ASCL3Q9NQ33 180 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ABCF3Q9NUQ8 709 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ASF1AQ9Y294 204 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 AP1M2Q9Y6Q5 423 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 WDFY4Q6ZS81 3184 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TMEM114B3SHH9 223 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 OR7A17O14581 309 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 DLX3O60479 287 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 SRPX2O60687 465 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 ZBTB11O95625 1053 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 RPLP0P05388 317 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 PCSK2P16519 638 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 RPL10P27635 214 aaKnown RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 INHBCP55103 352 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 C21orf58P58505 322 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 RAB15P59190 212 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 CSNK1G2P78368 415 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 IRX1P78414 480 aaPredicted RBP6.75□□□□□ -1.33
LIMA1-202ENST00000394943 TRAF3Q13114 568 aa6.75□□□□□ -1.33
LIMA1-202ENST00000394943 UNC50Q53HI1 259 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms