RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 LEFTY2O00292 366 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 PLOD2O00469 737 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 RAP2AP10114 183 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 SRCP12931 536 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 STK19P49842 368 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-204ENST00000392003 ENTPD1P49961 510 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 LBX1P52954 281 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 POLR2LP62875 67 aaKnown RBP9.4□□□□□ -0.9
COL6A3-204ENST00000392003 ZXDBP98169 803 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 CDKL4Q5MAI5 379 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 OTUD3Q5T2D3 398 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-204ENST00000392003 GPR141Q7Z602 305 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 CLEC4FQ8N1N0 589 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 SELENOMQ8WWX9 145 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 NCLNQ969V3 563 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 FAM162AQ96A26 154 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 OR52E6Q96RD3 313 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 RAD9AQ99638 391 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 NEK6Q9HC98 313 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 LIMD1Q9UGP4 676 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 RSL24D1Q9UHA3 163 aaKnown RBP9.4□□□□□ -0.9
COL6A3-204ENST00000392003 SNX6Q9UNH7 406 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 H3BSA7 217 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 RFPL2O75678 378 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 UGT2B4P06133 528 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 C8GP07360 202 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 SYN1P17600 705 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 MAPK1P28482 360 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 HAAOP46952 286 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 TPD52P55327 224 aaPredicted RBP9.4□□□□□ -0.9
COL6A3-204ENST00000392003 CYP4F3Q08477 520 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 COX10Q12887 443 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 PTGR1Q14914 329 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 ADGRG2Q8IZP9 1017 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 POF1BQ8WVV4 589 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 NXPE3Q969Y0 559 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 LYSMD1Q96S90 227 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 BBS2Q9BXC9 721 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 OSBPL6Q9BZF3 934 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 ABCG8Q9H221 673 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 RMND5AQ9H871 391 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 HCFC1R1Q9NWW0 138 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 USP22Q9UPT9 525 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 ANAPC1Q9H1A4 1944 aa9.4□□□□□ -0.9
COL6A3-204ENST00000392003 FAM25EA8MYX2 175 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 NEDD8-MDP1E9PL57 170 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 KMOO15229 486 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 DFNA5O60443 496 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 CYP2A7P20853 494 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 HRH2P25021 359 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 S100A3P33764 101 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 ATP1A4Q13733 1029 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 SLC36A3Q495N2 470 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 CARD16Q5EG05 197 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 RGL4Q8IZJ4 473 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 CADM3Q8N126 398 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 DTWD1Q8N5C7 304 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 KIAA1958Q8N8K9 716 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 TOR1AIP2Q8NFQ8 470 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 ISG20Q96AZ6 181 aaKnown RBP9.4□□□□□ -0.91
COL6A3-204ENST00000392003 CXXC1Q9P0U4 656 aaPredicted RBP9.4□□□□□ -0.91
COL6A3-204ENST00000392003 CLEC4EQ9ULY5 219 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 INVSQ9Y283 1065 aa9.4□□□□□ -0.91
COL6A3-204ENST00000392003 MICAL3Q7RTP6 2002 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ELOVL7A1L3X0 281 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 KPNA5O15131 536 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 XYLBO75191 536 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ARHGEF15O94989 841 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 BMP10O95393 424 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 PGRP06401 933 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 PCSK2P16519 638 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 NAGAP17050 411 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 PTPN2P17706 415 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 GGT1P19440 569 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 XPAP23025 273 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CA5AP35218 305 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 NNMTP40261 264 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 PCYT1AP49585 367 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CDH15P55291 814 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ERVFC1P60507 584 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 RPS14P62263 151 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 BOP1Q14137 746 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CDKN3Q16667 212 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ATP13A5Q4VNC0 1218 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SPANXN4Q5MJ08 99 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 MBOAT1Q6ZNC8 495 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 LRRC70Q7Z2Q7 622 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 TRIM46Q7Z4K8 759 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 RBM23Q86U06 439 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 STK32CQ86UX6 486 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 C7orf61Q8IZ16 206 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 OR10A6Q8NH74 314 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 DNAJB8Q8NHS0 232 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 CDC26Q8NHZ8 85 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 FBXO30Q8TB52 745 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 MCOLN3Q8TDD5 553 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 FAM120BQ96EK7 910 aaKnown RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ZNF641Q96N77 438 aaPredicted RBP9.39□□□□□ -0.91
COL6A3-204ENST00000392003 SLC46A2Q9BY10 475 aa9.39□□□□□ -0.91
COL6A3-204ENST00000392003 ING2Q9H160 280 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms