RNA–Protein interactions for RNA: ENST00000376707.4

VSX1-201, Transcript of visual system homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene VSX1, Length 943 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-201ENST00000376707 SOX13Q9UN79 622 aa20.16■□□□□ 0.82
VSX1-201ENST00000376707 B3GNT3Q9Y2A9 372 aa20.16■□□□□ 0.82
VSX1-201ENST00000376707 FAM169AQ9Y6X4 670 aa20.16■□□□□ 0.82
VSX1-201ENST00000376707 KRT87PA6NCN2 255 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 TCP11X1B4DZS4 312 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 MASP2O00187 686 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 NIPSNAP2O75323 286 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 MMP11P24347 488 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 VSX2P58304 361 aaPredicted RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 SARNPP82979 210 aaKnown RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 GPS1Q13098 491 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 TRIP13Q15645 432 aaPredicted RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 NKG7Q16617 165 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 CYP1B1Q16678 543 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 TYSND1Q2T9J0 566 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 FAM214AQ32MH5 1076 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 PLEKHN1Q494U1 663 aaPredicted RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 OR2L3Q8NG85 312 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 HMGCLL1Q8TB92 370 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 LPGAT1Q92604 370 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 FAM136AQ96C01 138 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 ZNF285Q96NJ3 590 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 TCF12Q99081 682 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 ILKAPQ9H0C8 392 aaPredicted RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 IL1RAPL1Q9NZN1 696 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 SPATA7Q9P0W8 599 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 NXT1Q9UKK6 140 aaKnown RBP20.15■□□□□ 0.82
VSX1-201ENST00000376707 FER1L5A0AVI2 2057 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 NAV2Q8IVL1 2488 aa20.15■□□□□ 0.82
VSX1-201ENST00000376707 SRPX2O60687 465 aaPredicted RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 CTSVO60911 334 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 ONECUT2O95948 504 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 ESR1P03372 595 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 PAMP19021 973 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 CHRM3P20309 590 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 ITGA3P26006 1051 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 VPS41P49754 854 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 SOX8P57073 446 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 AIMP2Q13155 320 aaKnown RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 KCTD19Q17RG1 926 aaPredicted RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 WASHC2DQ5SRD0 308 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 KIAA0930Q6ICG6 404 aaPredicted RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 IGFL3Q6UXB1 125 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 ZADH2Q8N4Q0 377 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 METTL27Q8N6F8 245 aaPredicted RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 ZDHHC19Q8WVZ1 309 aaPredicted RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 MAGOHBQ96A72 148 aaKnown RBP20.14■□□□□ 0.81
VSX1-201ENST00000376707 MS4A14Q96JA4 679 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 SPSB2Q99619 263 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 SLC26A1Q9H2B4 701 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 ENAMQ9NRM1 1142 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 FBXL4Q9UKA2 621 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 CRYL1Q9Y2S2 319 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 NEU2Q9Y3R4 380 aa20.14■□□□□ 0.81
VSX1-201ENST00000376707 FITM1A5D6W6 292 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 KRT14P02533 472 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 ATP5DP30049 168 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 OR1D4P47884 311 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 ADARP55265 1226 aaKnown RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 MRPL49Q13405 166 aaKnown RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 CASC4Q6P4E1 433 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 SHISA6Q6ZSJ9 500 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 COX15Q7KZN9 410 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 CAND1Q86VP6 1230 aaKnown RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 OR2A1Q8NGT9 310 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 SNRNP40Q96DI7 357 aaKnown RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 C19orf60Q96EN9 201 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 NAP1L3Q99457 506 aaPredicted RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 SOX17Q9H6I2 414 aaPredicted RBP20.13■□□□□ 0.81
VSX1-201ENST00000376707 SLC6A20Q9NP91 592 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 CTSFQ9UBX1 484 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 KLK4Q9Y5K2 254 aa20.13■□□□□ 0.81
VSX1-201ENST00000376707 SNRNP200O75643 2136 aaKnown RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 A0A0J9YVX5 310 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 A0A1W2PPV9 198 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 HYKKA2RU49 373 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 E5RI56 91 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 AVILO75366 819 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 MATN4O95460 622 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 EIF2S1P05198 315 aaKnown RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 MLNP12872 115 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 OGNP20774 298 aaKnown RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 CMPK1P30085 196 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 COILP38432 576 aaPredicted RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 GBX1Q14549 363 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 NAA25Q14CX7 972 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 EIF2S3LQ2VIR3 472 aaKnown RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 IRAK1BP1Q5VVH5 260 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 PRAMEF13Q5VWM6 474 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 ANKRD22Q5VYY1 191 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 FRMPD2BQ6IN97 320 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 REXO1L1PQ8IX06 675 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 CISD2Q8N5K1 135 aaKnown RBP20.12■□□□□ 0.81
VSX1-201ENST00000376707 MCUQ8NE86 351 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 OR9A1PQ8NGU1 263 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 SSC4DQ8WTU2 575 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 VPS50Q96JG6 964 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 ACAT2Q9BWD1 397 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 SAMD15Q9P1V8 674 aa20.12■□□□□ 0.81
VSX1-201ENST00000376707 ZC3H7BQ9UGR2 993 aaKnown RBP20.12■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms