RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SLC30A3Q99726 388 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 MIPEPQ99797 713 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 SELENOSQ9BQE4 189 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 SLC22A11Q9NSA0 550 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 C20orf96Q9NUD7 363 aaPredicted RBP20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 PCDHGB7Q9Y5F8 929 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 PCSK5Q92824 1860 aa20.81■□□□□ 0.92
CCDC28B-201ENST00000373602 A0A1B0GX78 115 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 MYO1CO00159 1063 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 SRPX2O60687 465 aaPredicted RBP20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 CTSVO60911 334 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 ONECUT2O95948 504 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 CATP04040 527 aaKnown RBP20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 ITGAXP20702 1163 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 MCM3P25205 808 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 SLC1A2P43004 574 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 GRM7Q14831 915 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 PPP1R7Q15435 360 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 IGFBP7Q16270 282 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 TTLL9Q3SXZ7 439 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 MRGPREQ86SM8 312 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 GIMAP7Q8NHV1 300 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 KCNJ9Q92806 393 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 PTERQ96BW5 349 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 CCDC68Q9H2F9 335 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 FAM114A2Q9NRY5 505 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 CUTCQ9NTM9 273 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 FAM169AQ9Y6X4 670 aa20.8■□□□□ 0.92
CCDC28B-201ENST00000373602 TNRC6AQ8NDV7 1962 aaKnown RBP20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 FITM1A5D6W6 292 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 DSCR3O14972 297 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 ATXN8OSP0DMR3 200 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 ARHGAP19Q14CB8 494 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 TTC29Q8NA56 475 aaPredicted RBP20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 FDCSPQ8NFU4 85 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 SMPDL3AQ92484 453 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 SLCO2A1Q92959 643 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 DDX47Q9H0S4 455 aaKnown RBP20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 FBXO5Q9UKT4 447 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 ZNF451Q9Y4E5 1061 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 COMMD10Q9Y6G5 202 aa20.79■□□□□ 0.92
CCDC28B-201ENST00000373602 CCDC88CQ9P219 2028 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 DNALI1O14645 258 aaPredicted RBP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 UMODP07911 640 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 TCP1P17987 556 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 CMPK1P30085 196 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 FOXL2P58012 376 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 YBX1P67809 324 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 PTK6Q13882 451 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 NAA25Q14CX7 972 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 HSP90AA5PQ58FG0 334 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 RNF44Q7L0R7 432 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 SERBP1Q8NC51 408 aaKnown RBP eCLIP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 FBXO15Q8NCQ5 510 aaPredicted RBP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 INPP5DQ92835 1189 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 MIB2Q96AX9 1013 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 FKBP10Q96AY3 582 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 PKP4Q99569 1192 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 FAM167BQ9BTA0 163 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 NUDT9Q9BW91 350 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 ASIC3Q9UHC3 531 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 PCYOX1Q9UHG3 505 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 G3BP2Q9UN86 482 aaKnown RBP20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 DHRS7Q9Y394 339 aa20.78■□□□□ 0.92
CCDC28B-201ENST00000373602 FLNBO75369 2602 aaKnown RBP20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 A0A0J9YVX5 310 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 OR2A25A4D2G3 310 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 NRP2O60462 931 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 HAUS5O94927 633 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 ALBP02768 609 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 MPC1LP0DKB6 136 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 PIM1P11309 404 aaPredicted RBP20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 ENO3P13929 434 aaPredicted RBP20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 PGAM1P18669 254 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 HSD17B2P37059 387 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 VSX2P58304 361 aaPredicted RBP20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 MPP1Q00013 466 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 CUL1Q13616 776 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 FAM214AQ32MH5 1076 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 WASHC2DQ5SRD0 308 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 FRMPD2BQ6IN97 320 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 CYHR1Q6ZMK1 362 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 OVCH1Q7RTY7 1134 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 KCNMB4Q86W47 210 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 HPS6Q86YV9 775 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 SPNS2Q8IVW8 549 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 TMEM151BQ8IW70 566 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 FER1L6-AS2Q96M78 137 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 GPR21Q99679 349 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 DPH7Q9BTV6 452 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 ACAT2Q9BWD1 397 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 PLAAQ9Y263 795 aa20.77■□□□□ 0.92
CCDC28B-201ENST00000373602 ANKRD12Q6UB98 2062 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 A6NL46 340 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 ZNF839A8K0R7 811 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 PEX12O00623 359 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 IGHEP01854 428 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 PNLIPRP1P54315 467 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 MLLT10P55197 1068 aa20.76■□□□□ 0.91
CCDC28B-201ENST00000373602 DHX9Q08211 1270 aaKnown RBP20.76■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms