RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 ANK3Q12955 4377 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 ZZEF1O43149 2961 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 A0A0J9YYE9 177 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 IQANK1A0A1B0GTG1 560 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PMS2P1A4D2B8 440 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MEI4A8MW99 385 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 STX16-NPEPL1H3BU86 382 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PLOD2O00469 737 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NME4O00746 187 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PRICKLE3O43900 615 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 B4GALT2O60909 372 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TMCC1O94876 653 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TRBC1P01850 177 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 POLBP06746 335 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CCDC166P0CW27 439 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MYOGP15173 224 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 OGNP20774 298 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 CD6P30203 668 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CORO1AP31146 461 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 HOXA9P31269 272 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GKP32189 559 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PTDSS1P48651 473 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 SERPINH1P50454 418 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 RRADP55042 308 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TAS2R38P59533 333 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ERVPABLB-1P60509 514 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HERVK_113P63132 956 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 IL9RQ01113 521 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 EEF1A2Q05639 463 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 ITGA9Q13797 1035 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RCAN2Q14206 197 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SELPLGQ14242 412 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SSPNQ14714 243 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TAF1AQ15573 450 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 LIN54Q6MZP7 749 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FAM45BPQ6NSW5 357 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CRTC1Q6UUV9 634 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 GSTA5Q7RTV2 222 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NET1Q7Z628 596 aaPredicted RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 TFAP2DQ7Z6R9 452 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 DCP2Q8IU60 420 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 NUDT10Q8NFP7 164 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 OR5AN1Q8NGI8 311 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ABHD4Q8TB40 342 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 FAM45AQ8TCE6 357 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ADAMTS16Q8TE57 1224 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 WDR34Q96EX3 536 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NUDT11Q96G61 164 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TOE1Q96GM8 510 aaKnown RBP2.26□□□□□ -2.05
VPS54-202ENST00000354504 COX14Q96I36 57 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 COQ10AQ96MF6 247 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SMC6Q96SB8 1091 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NDNQ99608 321 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TUBB6Q9BUF5 446 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CRB3Q9BUF7 120 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ERVK-6Q9BXR3 956 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 PLA2G2FQ9BZM2 168 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 OR10A5Q9H207 317 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 HEBP1Q9NRV9 189 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 ABCB8Q9NUT2 735 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 CMTM6Q9NX76 183 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 SORCS3Q9UPU3 1222 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 DMTF1Q9Y222 760 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 POMPQ9Y244 141 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 DNAJC16Q9Y2G8 782 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 RAP2CQ9Y3L5 183 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 MYO10Q9HD67 2058 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 NUMA1Q14980 2115 aa2.26□□□□□ -2.05
VPS54-202ENST00000354504 TNRC6AQ8NDV7 1962 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 IGKV1-8A0A0C4DH67 115 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 A0A1W2PPV9 198 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 C1orf226A1L170 272 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CCDC78A2IDD5 438 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 FAM234BA2RU67 622 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 LINC01553A4QN01 128 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CDC7O00311 574 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 MTSS1O43312 755 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 KERAO60938 352 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PMPCBO75439 489 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 RPP40O75818 363 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 BAIAP3O94812 1187 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 VAPBO95292 243 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SIX3O95343 332 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 PSMG1O95456 288 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 ANP32DO95626 131 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 GLUD1P00367 558 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HTR1AP08908 422 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 SRGAP2BP0DMP2 458 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PFKLP17858 780 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 XRCC1P18887 633 aaPredicted RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 ACRV1P26436 265 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR1D2P34982 312 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PHBP35232 272 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 HNF1BP35680 557 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 CSKP41240 450 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 OR1G1P47890 313 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 AGFG1P52594 562 aaKnown RBP2.25□□□□□ -2.05
VPS54-202ENST00000354504 THOP1P52888 689 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 DCDC1P59894 354 aa2.25□□□□□ -2.05
VPS54-202ENST00000354504 PFN3P60673 137 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms