RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 SERHLQ9NQF3 203 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 KRT84Q9NSB2 600 aa21.8■■□□□ 1.08
TRIM28-202ENST00000341753 TNPO3Q9Y5L0 923 aaKnown RBP21.8■■□□□ 1.08
TRIM28-202ENST00000341753 AGAP5A6NIR3 686 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 LOC730098B7Z3J9 87 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 INSIG1O15503 277 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 VIPP01282 170 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ARHGDIAP52565 204 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 KEAP1Q14145 624 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 SNX20Q7Z614 316 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CELF2-AS1Q8N7Q2 184 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ATL1Q8WXF7 558 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 QPCTLQ9NXS2 382 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 WWOXQ9NZC7 414 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 IFT52Q9Y366 437 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 SAMHD1Q9Y3Z3 626 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 PABPN1LA6NDY0 278 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 METTL15A6NJ78 407 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 RAD51BO15315 384 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 GRK5P34947 590 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CA5AP35218 305 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 FAM189BP81408 668 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 DMPKQ09013 629 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 PLEKHG6Q3KR16 790 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 DDX59Q5T1V6 619 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 FKBP9P1Q75LS8 142 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 HORMAD1Q86X24 394 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CLDN19Q8N6F1 224 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 FBXO32Q969P5 355 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ZNF486Q96H40 463 aaPredicted RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 UROC1Q96N76 676 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 BOCQ9BWV1 1114 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 NDRG4Q9ULP0 352 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ABT1Q9ULW3 272 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ZNF451Q9Y4E5 1061 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 TACR1P25103 407 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CASP3P42574 277 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 RPP38P78345 283 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CPSF6Q16630 551 aaKnown RBP eCLIP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ZCCHC8Q6NZY4 707 aaKnown RBP21.79■■□□□ 1.08
TRIM28-202ENST00000341753 APH1BQ8WW43 257 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 ITPAQ9BY32 194 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CIPCQ9C0C6 399 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 TNKS2Q9H2K2 1166 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CCSER2Q9H7U1 834 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 RAI2Q9Y5P3 530 aa21.79■■□□□ 1.08
TRIM28-202ENST00000341753 CA12O43570 354 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 PRAMEF12O95522 483 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 BMP1P13497 986 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 TACR2P21452 398 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 TRPC1P48995 793 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 YBEYP58557 167 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 CTXN3Q4LDR2 81 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 GPR153Q6NV75 609 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 RSPO2Q6UXX9 243 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 ADAMTSL2Q86TH1 951 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 PLPP6Q8IY26 295 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 OR52E4Q8NGH9 312 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 SLC38A4Q969I6 547 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 SEPT5Q99719 369 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 GPR62Q9BZJ7 368 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 UBA2Q9UBT2 640 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 TESMINQ9Y4I5 508 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 ARIH1Q9Y4X5 557 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 UPK3BL1B0FP48 263 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 UPK3BL2E5RIL1 263 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 M0R082 166 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 FKBP9O95302 570 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 S100A3P33764 101 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 USP39Q53GS9 565 aaKnown RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 TPRG1LQ5T0D9 272 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 LACC1Q8IV20 430 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 ULK4Q96C45 1275 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 DPH2Q9BQC3 489 aaPredicted RBP21.78■■□□□ 1.08
TRIM28-202ENST00000341753 CLSTN3Q9BQT9 956 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 PARVBQ9HBI1 364 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 RNF6Q9Y252 685 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 VPS9D1Q9Y2B5 631 aa21.78■■□□□ 1.08
TRIM28-202ENST00000341753 NUDT6P53370 316 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 RPS24P62847 133 aaKnown RBP21.77■■□□□ 1.08
TRIM28-202ENST00000341753 DSC1Q08554 894 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 TAF10Q12962 218 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 KIAA1614Q5VZ46 1190 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 PTRHD1Q6GMV3 140 aaKnown RBP21.77■■□□□ 1.08
TRIM28-202ENST00000341753 METTL4Q8N3J2 472 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 TMEM132CQ8N3T6 1108 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 PARP16Q8N5Y8 322 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 GLB1L3Q8NCI6 653 aaPredicted RBP21.77■■□□□ 1.08
TRIM28-202ENST00000341753 EGLN2Q96KS0 407 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 NEK6Q9HC98 313 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 DHRS7Q9Y394 339 aa21.77■■□□□ 1.08
TRIM28-202ENST00000341753 DSCR3O14972 297 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 NTRK1P04629 796 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 SLC6A4P31645 630 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 MAGEA2P43356 314 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 ACLYP53396 1101 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 CXCR4P61073 352 aa21.77■■□□□ 1.07
TRIM28-202ENST00000341753 RSBN1Q5VWQ0 802 aaPredicted RBP21.77■■□□□ 1.07
TRIM28-202ENST00000341753 CCBE1Q6UXH8 406 aaPredicted RBP21.77■■□□□ 1.07
TRIM28-202ENST00000341753 ENTHD1Q8IYW4 607 aa21.77■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms