RNA–Protein interactions for RNA: ENST00000338427.10

NUDCD3-201, Transcript of NudC domain containing 3, humanhuman

TSL 3

Gene NUDCD3, Length 779 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3-201ENST00000338427 PRSS58Q8IYP2 241 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 SHISA5Q8N114 240 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 CISD2Q8N5K1 135 aaKnown RBP12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 PPFIBP2Q8ND30 876 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 OR2L3Q8NG85 312 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 GSDMBQ8TAX9 411 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 PROKR1Q8TCW9 393 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 COG1Q8WTW3 980 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 PKP4Q99569 1192 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 SMAD5Q99717 465 aaKnown RBP12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 ABCF3Q9NUQ8 709 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 MAP10Q9P2G4 905 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 PADI2Q9Y2J8 665 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 NEU2Q9Y3R4 380 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 SHANK1Q9Y566 2161 aa12.8□□□□□ -0.36
NUDCD3-201ENST00000338427 PEX12O00623 359 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 DSCR3O14972 297 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 VPS4BO75351 444 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 MATN4O95460 622 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 RPN2P04844 631 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 RNF224P0DH78 156 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 RRADP55042 308 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SNRPNP63162 240 aaKnown RBP12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 CDK16Q00536 496 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 DHX34Q14147 1143 aaKnown RBP12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 CYP2A13Q16696 494 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 KIAA0930Q6ICG6 404 aaPredicted RBP12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 MRNIPQ6NTE8 343 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 CYHR1Q6ZMK1 362 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 ATCAYQ86WG3 371 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 LRRC6Q86X45 466 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 REXO1L1PQ8IX06 675 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 PARP9Q8IXQ6 854 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 GALNT16Q8N428 558 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 RASGEF1CQ8N431 466 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 FAM26EQ8N5C1 309 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 EFCAB3Q8N7B9 438 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 OR9A1PQ8NGU1 263 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 ZUFSPQ96AP4 578 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SLC22A18Q96BI1 424 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 ZNF669Q96BR6 464 aaPredicted RBP12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SIGLEC10Q96LC7 697 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 ZNF285Q96NJ3 590 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SELENOSQ9BQE4 189 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 DPH7Q9BTV6 452 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SLC6A20Q9NP91 592 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SLAMF7Q9NQ25 335 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 CTSFQ9UBX1 484 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 VPS4AQ9UN37 437 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 SRPK3Q9UPE1 567 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 MED16Q9Y2X0 877 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 CSAG2Q9Y5P2 127 aa12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 PRRC2CQ9Y520 2896 aaKnown RBP12.79□□□□□ -0.36
NUDCD3-201ENST00000338427 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 ZCWPW2A0A1B0GU75 182 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 HYKKA2RU49 373 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 SDR42E2A6NKP2 422 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 TCP11X1B4DZS4 312 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 TARM1B6A8C7 271 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 SOCS6O14544 535 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 KPNA5O15131 536 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 DPM1O60762 260 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 SEMA7AO75326 666 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 BANF1O75531 89 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 HAUS5O94927 633 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 STATHP02808 62 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 MAGEA6P43360 314 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 CLCN7P51798 805 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 ARSFP54793 590 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 GRM7Q14831 915 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 ZC3H12BQ5HYM0 836 aaKnown RBP12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 KIRREL2Q6UWL6 708 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 LAPTM4BQ86VI4 370 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 CILP2Q8IUL8 1156 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 SLC35F6Q8N357 371 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 GIMAP7Q8NHV1 300 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 INPP5DQ92835 1189 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 FER1L6-AS2Q96M78 137 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 FOPNLQ96NB1 174 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 PSMG3-AS1Q96PY0 264 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 TCF12Q99081 682 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 SPSB2Q99619 263 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 ATP13A2Q9NQ11 1180 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 HOMER3Q9NSC5 361 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 INTS7Q9NVH2 962 aaKnown RBP12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 CDC23Q9UJX2 597 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 PTPN13Q12923 2485 aa12.78□□□□□ -0.36
NUDCD3-201ENST00000338427 IGKV1-8A0A0C4DH67 115 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 FAM237BA0A1B0GVD1 139 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 A0A1B0GX78 115 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 CTAGE9A4FU28 777 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 FITM1A5D6W6 292 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 H0YGG7 62 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 AP3B1O00203 1094 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 KIF5CO60282 957 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 ONECUT2O95948 504 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 ESR1P03372 595 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 PGGT1BP53609 377 aa12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 ARF3P61204 181 aaPredicted RBP12.77□□□□□ -0.37
NUDCD3-201ENST00000338427 MPP1Q00013 466 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms