RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 GPN1Q9HCN4 374 aaPredicted RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 VPS29Q9UBQ0 182 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 USP2O75604 605 aaPredicted RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 GNAO1P09471 354 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 SMPD1P17405 629 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 AGTR2P50052 363 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 CD47Q08722 323 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 MAB21L1Q13394 359 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 SYVN1Q86TM6 617 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 LILRA2Q8N149 483 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 IL4I1Q96RQ9 567 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 STARD7Q9NQZ5 370 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 GTF2IRD1Q9UHL9 959 aa18.86■□□□□ 0.61
USP48-201ENST00000308271 OAS3Q9Y6K5 1087 aaKnown RBP18.86■□□□□ 0.61
USP48-201ENST00000308271 PTTG1O95997 202 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 NCSTNQ92542 709 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 IMP4Q96G21 291 aaKnown RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 KCNH6Q9H252 994 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 MALT1Q9UDY8 824 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 FAM86C2PA6NEL3 165 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 LOC730098B7Z3J9 87 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 HSF2Q03933 536 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 SCARB2Q14108 478 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 TBRG1Q3YBR2 411 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 NOL9Q5SY16 702 aaKnown RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 FRG2Q64ET8 278 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 TRIM48Q8IWZ4 208 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 TMEM102Q8N9M5 508 aaPredicted RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 ZNF675Q8TD23 568 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 FRG2BQ96QU4 278 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 MAGIXQ9H6Y5 334 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 FAM120CQ9NX05 1096 aaKnown RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 KIAA1522Q9P206 1035 aaPredicted RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 TLR4O00206 839 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 SLC13A2Q13183 592 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 C9orf131Q5VYM1 1079 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 RASSF6Q6ZTQ3 369 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 OR8H3Q8N146 312 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 MTERF1Q99551 399 aaKnown RBP18.85■□□□□ 0.61
USP48-201ENST00000308271 IL12RB2Q99665 862 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 TBC1D17Q9HA65 648 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 DHRS7Q9Y394 339 aa18.85■□□□□ 0.61
USP48-201ENST00000308271 FGF4P08620 206 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 GTF2E2P29084 291 aaKnown RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 TMEM44Q2T9K0 475 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 KANK2Q63ZY3 851 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 XKRXQ6PP77 449 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 LRRC70Q7Z2Q7 622 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 DNAJB7Q7Z6W7 309 aaPredicted RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 ISCA2Q86U28 154 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 AMIGO3Q86WK7 504 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 SH3YL1Q96HL8 342 aaPredicted RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 TTYH1Q9H313 450 aaPredicted RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 PADI3Q9ULW8 664 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 DLGAP1O14490 977 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 S100A9P06702 114 aaKnown RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 GGT1P19440 569 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 TGFBR2P37173 567 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 STARP49675 285 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 FOXB2Q5VYV0 432 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 CXorf57Q6NSI4 855 aaKnown RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 OXR1Q8N573 874 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 NSUN3Q9H649 340 aaKnown RBP18.84■□□□□ 0.61
USP48-201ENST00000308271 TPT1P8Q9HAU6 139 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 IRAK3Q9Y616 596 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 ANKRD33BA6NCL7 494 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 OR5F1O95221 314 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 DCKP27707 260 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 CAPZA2P47755 286 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 HNMTP50135 292 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 SERINC3Q13530 473 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 TBC1D25Q3MII6 688 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 ARMC6Q6NXE6 501 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 FCRL4Q96PJ5 515 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 TMEM246Q9BRR3 403 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 MND1Q9BWT6 205 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 IGSF5Q9NSI5 407 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 A0A1W2PQ67 120 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 H3BM21 787 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 ARVCFO00192 962 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 DDX59Q5T1V6 619 aaKnown RBP eCLIP18.84■□□□□ 0.61
USP48-201ENST00000308271 Q6ZNX1 250 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 SEC14L4Q9UDX3 406 aa18.84■□□□□ 0.61
USP48-201ENST00000308271 IGKV6D-21A0A0A0MT36 114 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 HAS3O00219 553 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 ATG13O75143 517 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 ZNF26P17031 533 aaPredicted RBP18.83■□□□□ 0.61
USP48-201ENST00000308271 FAUP35544 74 aaKnown RBP18.83■□□□□ 0.61
USP48-201ENST00000308271 RPS3AP61247 264 aaKnown RBP18.83■□□□□ 0.61
USP48-201ENST00000308271 TARDBPQ13148 414 aaKnown RBP eCLIP18.83■□□□□ 0.611e-8■■■■■ 32.1
USP48-201ENST00000308271 SMU1Q2TAY7 513 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 CRTAC1Q9NQ79 661 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 ITM2CQ9NQX7 267 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 TBC1D14Q9P2M4 693 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 ENPP5Q9UJA9 477 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 BAIAP2Q9UQB8 552 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 IGKV6-21A0A0C4DH24 114 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 PTGS2P35354 604 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 XKP51811 444 aa18.83■□□□□ 0.61
USP48-201ENST00000308271 PTGR1Q14914 329 aa18.83■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms